PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
alx1 | dr11_v1_chr18_+_16246806_16246806 | 0.62 | 5.0e-03 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr25_+_31276842 Show fit | 19.81 |
ENSDART00000187238
|
troponin I type 2a (skeletal, fast), tandem duplicate 4 |
|
chr1_-_43905252 Show fit | 9.62 |
ENSDART00000135477
ENSDART00000132089 |
si:dkey-22i16.3 |
|
chr4_-_13580348 Show fit | 7.86 |
ENSDART00000067160
|
opsin 1 (cone pigments), short-wave-sensitive 1 |
|
chr3_-_31079186 Show fit | 5.85 |
ENSDART00000145636
ENSDART00000140569 |
elongin B elongin B |
|
chr10_-_11385155 Show fit | 5.55 |
ENSDART00000064214
|
placenta-specific 8, tandem duplicate 1 |
|
chr20_-_40755614 Show fit | 5.38 |
ENSDART00000061247
|
connexin 32.3 |
|
chr19_+_10339538 Show fit | 4.98 |
ENSDART00000151808
ENSDART00000151235 |
recoverin 3 |
|
chr5_+_51594209 Show fit | 4.95 |
ENSDART00000164668
ENSDART00000058403 ENSDART00000055857 |
creatine kinase, mitochondrial 2b (sarcomeric) |
|
chr25_+_31227747 Show fit | 4.62 |
ENSDART00000033872
|
troponin I type 2a (skeletal, fast), tandem duplicate 1 |
|
chr2_+_50608099 Show fit | 4.57 |
ENSDART00000185805
ENSDART00000111135 |
neuronal differentiation 6b |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.6 | 31.5 | GO:0003009 | skeletal muscle contraction(GO:0003009) |
0.1 | 15.0 | GO:0050953 | sensory perception of light stimulus(GO:0050953) |
0.3 | 7.3 | GO:0048791 | calcium ion-regulated exocytosis of neurotransmitter(GO:0048791) |
0.2 | 6.4 | GO:0030073 | insulin secretion(GO:0030073) |
0.1 | 6.4 | GO:0018298 | protein-chromophore linkage(GO:0018298) |
1.6 | 6.3 | GO:0046166 | methylglyoxal biosynthetic process(GO:0019242) glyceraldehyde-3-phosphate biosynthetic process(GO:0046166) |
0.1 | 5.7 | GO:0006414 | translational elongation(GO:0006414) |
0.1 | 5.3 | GO:0006368 | transcription elongation from RNA polymerase II promoter(GO:0006368) |
0.5 | 5.0 | GO:0036368 | cone photoresponse recovery(GO:0036368) |
0.4 | 5.0 | GO:0046314 | phosphagen metabolic process(GO:0006599) phosphocreatine metabolic process(GO:0006603) phosphagen biosynthetic process(GO:0042396) phosphocreatine biosynthetic process(GO:0046314) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.7 | 31.5 | GO:0005861 | troponin complex(GO:0005861) |
0.0 | 27.9 | GO:0005615 | extracellular space(GO:0005615) |
0.0 | 11.0 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
0.0 | 10.8 | GO:0030424 | axon(GO:0030424) |
0.2 | 9.3 | GO:0043204 | perikaryon(GO:0043204) |
0.1 | 6.2 | GO:0001750 | photoreceptor outer segment(GO:0001750) |
0.3 | 5.8 | GO:0043195 | terminal bouton(GO:0043195) |
0.9 | 5.3 | GO:0030891 | VCB complex(GO:0030891) |
0.0 | 5.2 | GO:0030425 | dendrite(GO:0030425) |
0.5 | 5.0 | GO:0042583 | chromaffin granule(GO:0042583) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.6 | 6.3 | GO:0004807 | triose-phosphate isomerase activity(GO:0004807) methylglyoxal synthase activity(GO:0008929) |
0.1 | 6.2 | GO:0008020 | G-protein coupled photoreceptor activity(GO:0008020) |
0.1 | 5.9 | GO:0001786 | phosphatidylserine binding(GO:0001786) |
0.2 | 5.5 | GO:0005184 | neuropeptide hormone activity(GO:0005184) |
1.3 | 5.1 | GO:0016521 | pituitary adenylate cyclase activating polypeptide activity(GO:0016521) |
0.4 | 5.1 | GO:0005221 | intracellular cyclic nucleotide activated cation channel activity(GO:0005221) intracellular cAMP activated cation channel activity(GO:0005222) intracellular cGMP activated cation channel activity(GO:0005223) cyclic nucleotide-gated ion channel activity(GO:0043855) |
0.4 | 5.0 | GO:0004111 | creatine kinase activity(GO:0004111) phosphotransferase activity, nitrogenous group as acceptor(GO:0016775) |
0.1 | 5.0 | GO:0016917 | GABA receptor activity(GO:0016917) |
0.1 | 4.6 | GO:0003746 | translation elongation factor activity(GO:0003746) |
0.1 | 4.5 | GO:0019905 | syntaxin binding(GO:0019905) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 6.4 | PID RXR VDR PATHWAY | RXR and RAR heterodimerization with other nuclear receptor |
0.2 | 6.0 | NABA PROTEOGLYCANS | Genes encoding proteoglycans |
0.3 | 3.9 | PID CONE PATHWAY | Visual signal transduction: Cones |
0.2 | 2.9 | PID IL12 STAT4 PATHWAY | IL12 signaling mediated by STAT4 |
0.3 | 2.5 | SA FAS SIGNALING | The TNF-type receptor Fas induces apoptosis on ligand binding. |
0.1 | 1.8 | PID EPHA FWDPATHWAY | EPHA forward signaling |
0.0 | 1.7 | PID TRKR PATHWAY | Neurotrophic factor-mediated Trk receptor signaling |
0.0 | 1.5 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
0.1 | 1.4 | PID INTEGRIN2 PATHWAY | Beta2 integrin cell surface interactions |
0.0 | 1.4 | NABA ECM AFFILIATED | Genes encoding proteins affiliated structurally or functionally to extracellular matrix proteins |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 5.4 | REACTOME LIGAND GATED ION CHANNEL TRANSPORT | Genes involved in Ligand-gated ion channel transport |
0.1 | 3.3 | REACTOME STRIATED MUSCLE CONTRACTION | Genes involved in Striated Muscle Contraction |
0.1 | 3.1 | REACTOME PIP3 ACTIVATES AKT SIGNALING | Genes involved in PIP3 activates AKT signaling |
0.6 | 2.3 | REACTOME CYTOSOLIC SULFONATION OF SMALL MOLECULES | Genes involved in Cytosolic sulfonation of small molecules |
0.1 | 2.3 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
0.1 | 2.1 | REACTOME NITRIC OXIDE STIMULATES GUANYLATE CYCLASE | Genes involved in Nitric oxide stimulates guanylate cyclase |
0.1 | 2.1 | REACTOME AMYLOIDS | Genes involved in Amyloids |
0.0 | 2.1 | REACTOME PEPTIDE CHAIN ELONGATION | Genes involved in Peptide chain elongation |
0.0 | 1.9 | REACTOME PEPTIDE LIGAND BINDING RECEPTORS | Genes involved in Peptide ligand-binding receptors |
0.1 | 1.8 | REACTOME COMMON PATHWAY | Genes involved in Common Pathway |