PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
alx4a | dr11_v1_chr7_-_26924903_26924903 | -0.24 | 3.2e-01 | Click! |
alx4b | dr11_v1_chr18_+_38321039_38321039 | 0.22 | 3.6e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr9_-_22099536 Show fit | 1.85 |
ENSDART00000101923
|
|
|
chr22_+_7738966 Show fit | 1.26 |
ENSDART00000147073
|
si:ch73-44m9.5 |
|
chr17_-_37395460 Show fit | 1.11 |
ENSDART00000148160
ENSDART00000075975 |
cysteine-rich protein 1 |
|
chr3_-_31079186 Show fit | 1.07 |
ENSDART00000145636
ENSDART00000140569 |
elongin B elongin B |
|
chr25_+_29161609 Show fit | 0.94 |
ENSDART00000180752
|
pyruvate kinase M1/2b |
|
chr9_-_22129788 Show fit | 0.85 |
ENSDART00000124272
ENSDART00000175417 |
crystallin, gamma M2d8 |
|
chr15_+_45640906 Show fit | 0.80 |
ENSDART00000149361
ENSDART00000149079 |
S-antigen; retina and pineal gland (arrestin) b |
|
chr1_-_43915423 Show fit | 0.78 |
ENSDART00000181915
ENSDART00000113673 |
secretory calcium-binding phosphoprotein 5 |
|
chr3_+_24361096 Show fit | 0.74 |
ENSDART00000132387
|
parvalbumin 6 |
|
chr8_+_34731982 Show fit | 0.72 |
ENSDART00000066050
|
4-hydroxyphenylpyruvate dioxygenase b |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 1.2 | GO:0006572 | tyrosine catabolic process(GO:0006572) |
0.4 | 1.1 | GO:0071236 | cellular response to antibiotic(GO:0071236) cellular response to toxic substance(GO:0097237) |
0.1 | 0.9 | GO:0051965 | positive regulation of synapse assembly(GO:0051965) |
0.0 | 0.9 | GO:0048791 | calcium ion-regulated exocytosis of neurotransmitter(GO:0048791) |
0.0 | 0.9 | GO:0006096 | glycolytic process(GO:0006096) |
0.1 | 0.8 | GO:0002031 | G-protein coupled receptor internalization(GO:0002031) |
0.1 | 0.7 | GO:0060334 | regulation of response to interferon-gamma(GO:0060330) regulation of interferon-gamma-mediated signaling pathway(GO:0060334) |
0.1 | 0.7 | GO:0044805 | late nucleophagy(GO:0044805) |
0.0 | 0.7 | GO:0009636 | response to toxic substance(GO:0009636) |
0.0 | 0.7 | GO:0007599 | hemostasis(GO:0007599) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 1.1 | GO:0030891 | VCB complex(GO:0030891) |
0.1 | 0.9 | GO:0031045 | dense core granule(GO:0031045) |
0.0 | 0.8 | GO:0001917 | photoreceptor inner segment(GO:0001917) |
0.0 | 0.7 | GO:0000407 | pre-autophagosomal structure(GO:0000407) |
0.0 | 0.7 | GO:0005942 | phosphatidylinositol 3-kinase complex(GO:0005942) |
0.1 | 0.6 | GO:0070032 | synaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex(GO:0070032) |
0.0 | 0.5 | GO:0031932 | TORC2 complex(GO:0031932) |
0.0 | 0.5 | GO:0005861 | troponin complex(GO:0005861) |
0.1 | 0.4 | GO:0033018 | sarcoplasmic reticulum lumen(GO:0033018) |
0.1 | 0.4 | GO:0005955 | calcineurin complex(GO:0005955) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.3 | GO:0001786 | phosphatidylserine binding(GO:0001786) |
0.4 | 1.2 | GO:0003868 | 4-hydroxyphenylpyruvate dioxygenase activity(GO:0003868) |
0.2 | 0.9 | GO:0004743 | pyruvate kinase activity(GO:0004743) |
0.0 | 0.9 | GO:0005212 | structural constituent of eye lens(GO:0005212) |
0.1 | 0.8 | GO:0016936 | galactoside binding(GO:0016936) |
0.1 | 0.7 | GO:0003835 | beta-galactoside alpha-2,6-sialyltransferase activity(GO:0003835) |
0.0 | 0.7 | GO:0005504 | fatty acid binding(GO:0005504) |
0.0 | 0.7 | GO:0046935 | 1-phosphatidylinositol-3-kinase regulator activity(GO:0046935) |
0.0 | 0.7 | GO:0017075 | syntaxin-1 binding(GO:0017075) |
0.2 | 0.6 | GO:0015462 | protein-transmembrane transporting ATPase activity(GO:0015462) efflux transmembrane transporter activity(GO:0015562) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.4 | SA FAS SIGNALING | The TNF-type receptor Fas induces apoptosis on ligand binding. |
0.0 | 0.4 | NABA PROTEOGLYCANS | Genes encoding proteoglycans |
0.0 | 0.3 | PID TCR CALCIUM PATHWAY | Calcium signaling in the CD4+ TCR pathway |
0.0 | 0.2 | PID RAS PATHWAY | Regulation of Ras family activation |
0.0 | 0.2 | PID NFAT TFPATHWAY | Calcineurin-regulated NFAT-dependent transcription in lymphocytes |
0.0 | 0.1 | PID THROMBIN PAR4 PATHWAY | PAR4-mediated thrombin signaling events |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 0.7 | REACTOME TERMINATION OF O GLYCAN BIOSYNTHESIS | Genes involved in Termination of O-glycan biosynthesis |
0.0 | 0.5 | REACTOME LIGAND GATED ION CHANNEL TRANSPORT | Genes involved in Ligand-gated ion channel transport |
0.0 | 0.4 | REACTOME CHOLESTEROL BIOSYNTHESIS | Genes involved in Cholesterol biosynthesis |
0.1 | 0.3 | REACTOME CYTOSOLIC SULFONATION OF SMALL MOLECULES | Genes involved in Cytosolic sulfonation of small molecules |
0.0 | 0.3 | REACTOME TRANSPORT OF ORGANIC ANIONS | Genes involved in Transport of organic anions |
0.0 | 0.3 | REACTOME TRYPTOPHAN CATABOLISM | Genes involved in Tryptophan catabolism |
0.0 | 0.3 | REACTOME TRAFFICKING AND PROCESSING OF ENDOSOMAL TLR | Genes involved in Trafficking and processing of endosomal TLR |
0.0 | 0.3 | REACTOME DARPP 32 EVENTS | Genes involved in DARPP-32 events |
0.0 | 0.3 | REACTOME BASIGIN INTERACTIONS | Genes involved in Basigin interactions |
0.0 | 0.2 | REACTOME DIGESTION OF DIETARY CARBOHYDRATE | Genes involved in Digestion of dietary carbohydrate |