PRJEB1986: zebrafish developmental stages transcriptome
Gene Symbol | Gene ID | Gene Info |
---|---|---|
ENSDARG00000067729 | AT rich interactive domain 3C (BRIGHT-like) | |
ENSDARG00000070843 | AT rich interactive domain 3A (BRIGHT-like) | |
ENSDARG00000104034 | AT rich interactive domain 3B (BRIGHT-like) | |
ENSDARG00000114447 | AT rich interactive domain 3C (BRIGHT-like) |
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
arid3a | dr11_v1_chr11_+_5681762_5681762 | 0.92 | 1.6e-08 | Click! |
arid3c | dr11_v1_chr5_+_41322783_41322783 | 0.68 | 1.5e-03 | Click! |
arid3b | dr11_v1_chr25_-_29072162_29072162 | 0.39 | 1.0e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr3_+_21225750 Show fit | 9.37 |
ENSDART00000139213
|
zgc:153968 |
|
chr19_+_4139065 Show fit | 9.18 |
ENSDART00000172524
|
si:dkey-218f9.10 |
|
chr18_-_47662696 Show fit | 5.58 |
ENSDART00000184260
|
|
|
chr2_-_9489611 Show fit | 5.44 |
ENSDART00000146715
|
ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 |
|
chr10_+_23537576 Show fit | 5.38 |
ENSDART00000130515
|
|
|
chr8_+_3820134 Show fit | 5.18 |
ENSDART00000122454
|
citron rho-interacting serine/threonine kinase b |
|
chr9_+_1139378 Show fit | 4.82 |
ENSDART00000170033
|
solute carrier family 15 (oligopeptide transporter), member 1a |
|
chr23_+_21544227 Show fit | 4.21 |
ENSDART00000140253
|
Rho guanine nucleotide exchange factor (GEF) 10-like b |
|
chr19_-_11208782 Show fit | 4.18 |
ENSDART00000044426
ENSDART00000189754 |
si:dkey-240h12.4 |
|
chr5_+_5398966 Show fit | 3.86 |
ENSDART00000139553
|
mitogen-activated protein kinase associated protein 1 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.9 | 7.8 | GO:0006857 | oligopeptide transport(GO:0006857) |
0.4 | 5.4 | GO:0001574 | ganglioside biosynthetic process(GO:0001574) |
0.1 | 5.2 | GO:0018107 | peptidyl-threonine phosphorylation(GO:0018107) |
0.3 | 4.2 | GO:0006991 | response to sterol depletion(GO:0006991) SREBP signaling pathway(GO:0032933) cellular response to sterol depletion(GO:0071501) |
0.6 | 3.9 | GO:0030952 | establishment or maintenance of cytoskeleton polarity(GO:0030952) mesendoderm migration(GO:0090133) cell migration involved in mesendoderm migration(GO:0090134) |
0.0 | 3.3 | GO:0030203 | glycosaminoglycan metabolic process(GO:0030203) |
0.1 | 3.2 | GO:1901385 | regulation of voltage-gated calcium channel activity(GO:1901385) |
0.0 | 3.0 | GO:0007601 | visual perception(GO:0007601) |
0.3 | 2.6 | GO:0097476 | spinal cord motor neuron migration(GO:0097476) lateral motor column neuron migration(GO:0097477) |
0.2 | 2.3 | GO:0097090 | presynaptic membrane organization(GO:0097090) postsynaptic membrane assembly(GO:0097104) presynaptic membrane assembly(GO:0097105) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 8.6 | GO:0005802 | trans-Golgi network(GO:0005802) |
0.0 | 5.2 | GO:0005764 | lysosome(GO:0005764) |
0.0 | 4.9 | GO:0009986 | cell surface(GO:0009986) |
0.2 | 3.9 | GO:0031932 | TORC2 complex(GO:0031932) |
0.0 | 2.4 | GO:0005891 | voltage-gated calcium channel complex(GO:0005891) |
0.0 | 1.7 | GO:0016459 | myosin complex(GO:0016459) |
0.1 | 1.5 | GO:0000145 | exocyst(GO:0000145) |
0.0 | 1.5 | GO:0005834 | heterotrimeric G-protein complex(GO:0005834) |
0.2 | 1.2 | GO:0008091 | spectrin(GO:0008091) |
0.1 | 1.1 | GO:0097038 | perinuclear endoplasmic reticulum(GO:0097038) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.1 | 7.8 | GO:0071916 | dipeptide transporter activity(GO:0042936) dipeptide transmembrane transporter activity(GO:0071916) |
0.0 | 7.7 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
0.0 | 6.1 | GO:0005085 | guanyl-nucleotide exchange factor activity(GO:0005085) |
0.7 | 5.4 | GO:0001665 | alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity(GO:0001665) |
0.3 | 4.2 | GO:0004687 | myosin light chain kinase activity(GO:0004687) |
0.0 | 4.2 | GO:0005096 | GTPase activator activity(GO:0005096) |
0.2 | 3.7 | GO:0008449 | N-acetylglucosamine-6-sulfatase activity(GO:0008449) |
0.1 | 3.2 | GO:0005546 | phosphatidylinositol-4,5-bisphosphate binding(GO:0005546) |
0.1 | 2.6 | GO:0008331 | high voltage-gated calcium channel activity(GO:0008331) |
0.0 | 2.4 | GO:0004683 | calmodulin-dependent protein kinase activity(GO:0004683) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 3.9 | PID PI3KCI AKT PATHWAY | Class I PI3K signaling events mediated by Akt |
0.0 | 3.0 | NABA ECM REGULATORS | Genes encoding enzymes and their regulators involved in the remodeling of the extracellular matrix |
0.1 | 1.5 | PID ANGIOPOIETIN RECEPTOR PATHWAY | Angiopoietin receptor Tie2-mediated signaling |
0.1 | 1.4 | PID IL5 PATHWAY | IL5-mediated signaling events |
0.0 | 1.3 | PID CXCR4 PATHWAY | CXCR4-mediated signaling events |
0.0 | 1.3 | PID ERA GENOMIC PATHWAY | Validated nuclear estrogen receptor alpha network |
0.1 | 1.2 | PID INTEGRIN A4B1 PATHWAY | Alpha4 beta1 integrin signaling events |
0.0 | 1.2 | PID TGFBR PATHWAY | TGF-beta receptor signaling |
0.1 | 0.8 | PID S1P S1P4 PATHWAY | S1P4 pathway |
0.0 | 0.8 | PID RHODOPSIN PATHWAY | Visual signal transduction: Rods |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.6 | 5.4 | REACTOME TERMINATION OF O GLYCAN BIOSYNTHESIS | Genes involved in Termination of O-glycan biosynthesis |
0.2 | 3.9 | REACTOME CD28 DEPENDENT PI3K AKT SIGNALING | Genes involved in CD28 dependent PI3K/Akt signaling |
0.1 | 3.4 | REACTOME ABC FAMILY PROTEINS MEDIATED TRANSPORT | Genes involved in ABC-family proteins mediated transport |
0.2 | 2.3 | REACTOME SIGNALING BY NODAL | Genes involved in Signaling by NODAL |
0.0 | 2.2 | REACTOME TRANSPORT OF INORGANIC CATIONS ANIONS AND AMINO ACIDS OLIGOPEPTIDES | Genes involved in Transport of inorganic cations/anions and amino acids/oligopeptides |
0.1 | 1.8 | REACTOME METABOLISM OF STEROID HORMONES AND VITAMINS A AND D | Genes involved in Metabolism of steroid hormones and vitamins A and D |
0.1 | 1.5 | REACTOME TIE2 SIGNALING | Genes involved in Tie2 Signaling |
0.2 | 1.4 | REACTOME IL 7 SIGNALING | Genes involved in Interleukin-7 signaling |
0.1 | 1.2 | REACTOME NEPHRIN INTERACTIONS | Genes involved in Nephrin interactions |
0.1 | 1.2 | REACTOME PRE NOTCH PROCESSING IN GOLGI | Genes involved in Pre-NOTCH Processing in Golgi |