PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
arnt | dr11_v1_chr16_-_4610255_4610278 | 0.76 | 1.5e-04 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr17_+_10566490 Show fit | 1.40 |
ENSDART00000144408
ENSDART00000137469 |
MGA, MAX dimerization protein a |
|
chr3_+_23488652 Show fit | 0.98 |
ENSDART00000126282
|
nuclear receptor subfamily 1, group d, member 1 |
|
chr13_-_3516473 Show fit | 0.88 |
ENSDART00000146240
|
parkin RBR E3 ubiquitin protein ligase |
|
chr3_+_3810919 Show fit | 0.86 |
ENSDART00000056035
|
|
|
chr18_-_40684756 Show fit | 0.84 |
ENSDART00000113799
ENSDART00000139042 |
si:ch211-132b12.7 |
|
chr12_-_48943467 Show fit | 0.84 |
ENSDART00000191829
|
|
|
chr13_-_293250 Show fit | 0.81 |
ENSDART00000138581
|
chitin synthase 1 |
|
chr1_-_54765262 Show fit | 0.76 |
ENSDART00000150362
|
si:ch211-197k17.3 |
|
chr8_-_11640240 Show fit | 0.69 |
ENSDART00000091752
|
formin binding protein 1a |
|
chr13_+_46803979 Show fit | 0.66 |
ENSDART00000159260
|
|
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.4 | GO:0048264 | determination of ventral identity(GO:0048264) |
0.3 | 1.0 | GO:1904059 | regulation of locomotor rhythm(GO:1904059) |
0.0 | 1.0 | GO:0071277 | cellular response to calcium ion(GO:0071277) |
0.1 | 0.9 | GO:1900407 | regulation of cellular response to oxidative stress(GO:1900407) |
0.2 | 0.8 | GO:0042754 | negative regulation of circadian rhythm(GO:0042754) |
0.2 | 0.8 | GO:1901073 | chitin biosynthetic process(GO:0006031) glucosamine-containing compound biosynthetic process(GO:1901073) |
0.0 | 0.7 | GO:0007214 | gamma-aminobutyric acid signaling pathway(GO:0007214) |
0.1 | 0.6 | GO:0097345 | mitochondrial outer membrane permeabilization(GO:0097345) |
0.0 | 0.6 | GO:0042044 | fluid transport(GO:0042044) |
0.0 | 0.6 | GO:0046520 | sphingoid biosynthetic process(GO:0046520) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.4 | GO:0071141 | SMAD protein complex(GO:0071141) |
0.1 | 0.9 | GO:0034751 | aryl hydrocarbon receptor complex(GO:0034751) |
0.1 | 0.8 | GO:0030428 | cell septum(GO:0030428) |
0.1 | 0.6 | GO:0038039 | G-protein coupled receptor dimeric complex(GO:0038037) G-protein coupled receptor heterodimeric complex(GO:0038039) G-protein coupled receptor complex(GO:0097648) |
0.0 | 0.5 | GO:0030285 | integral component of synaptic vesicle membrane(GO:0030285) intrinsic component of synaptic vesicle membrane(GO:0098563) |
0.0 | 0.5 | GO:0005666 | DNA-directed RNA polymerase III complex(GO:0005666) |
0.0 | 0.4 | GO:0044224 | juxtaparanode region of axon(GO:0044224) |
0.0 | 0.3 | GO:0032588 | trans-Golgi network membrane(GO:0032588) |
0.0 | 0.3 | GO:0038201 | TOR complex(GO:0038201) |
0.0 | 0.2 | GO:0070195 | growth hormone receptor complex(GO:0070195) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.2 | GO:0019905 | syntaxin binding(GO:0019905) |
0.0 | 0.9 | GO:0031624 | ubiquitin conjugating enzyme binding(GO:0031624) |
0.1 | 0.8 | GO:0004100 | chitin synthase activity(GO:0004100) |
0.1 | 0.6 | GO:0004373 | glycogen (starch) synthase activity(GO:0004373) |
0.1 | 0.6 | GO:0070004 | cysteine-type exopeptidase activity(GO:0070004) |
0.1 | 0.6 | GO:0017040 | ceramidase activity(GO:0017040) |
0.1 | 0.6 | GO:0004965 | G-protein coupled GABA receptor activity(GO:0004965) |
0.0 | 0.6 | GO:0005432 | calcium:sodium antiporter activity(GO:0005432) |
0.0 | 0.6 | GO:0005222 | intracellular cyclic nucleotide activated cation channel activity(GO:0005221) intracellular cAMP activated cation channel activity(GO:0005222) intracellular cGMP activated cation channel activity(GO:0005223) cyclic nucleotide-gated ion channel activity(GO:0043855) |
0.1 | 0.5 | GO:0004740 | pyruvate dehydrogenase (acetyl-transferring) kinase activity(GO:0004740) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 0.9 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
0.0 | 0.7 | PID MTOR 4PATHWAY | mTOR signaling pathway |
0.0 | 0.5 | SIG REGULATION OF THE ACTIN CYTOSKELETON BY RHO GTPASES | Genes related to regulation of the actin cytoskeleton |
0.0 | 0.4 | SA G2 AND M PHASES | Cdc25 activates the cdc2/cyclin B complex to induce the G2/M transition. |
0.0 | 0.4 | PID FRA PATHWAY | Validated transcriptional targets of AP1 family members Fra1 and Fra2 |
0.0 | 0.4 | PID VEGFR1 2 PATHWAY | Signaling events mediated by VEGFR1 and VEGFR2 |
0.0 | 0.2 | PID ARF6 DOWNSTREAM PATHWAY | Arf6 downstream pathway |
0.0 | 0.2 | PID P38 GAMMA DELTA PATHWAY | Signaling mediated by p38-gamma and p38-delta |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.0 | REACTOME CIRCADIAN REPRESSION OF EXPRESSION BY REV ERBA | Genes involved in Circadian Repression of Expression by REV-ERBA |
0.1 | 0.6 | REACTOME CLASS C 3 METABOTROPIC GLUTAMATE PHEROMONE RECEPTORS | Genes involved in Class C/3 (Metabotropic glutamate/pheromone receptors) |
0.0 | 0.6 | REACTOME SPHINGOLIPID DE NOVO BIOSYNTHESIS | Genes involved in Sphingolipid de novo biosynthesis |
0.0 | 0.6 | REACTOME GLUCOSE METABOLISM | Genes involved in Glucose metabolism |
0.1 | 0.4 | REACTOME REGULATION OF RHEB GTPASE ACTIVITY BY AMPK | Genes involved in Regulation of Rheb GTPase activity by AMPK |
0.0 | 0.4 | REACTOME AKT PHOSPHORYLATES TARGETS IN THE CYTOSOL | Genes involved in AKT phosphorylates targets in the cytosol |
0.0 | 0.3 | REACTOME TRANSPORT OF ORGANIC ANIONS | Genes involved in Transport of organic anions |
0.0 | 0.2 | REACTOME GLUTATHIONE CONJUGATION | Genes involved in Glutathione conjugation |
0.0 | 0.2 | REACTOME HS GAG BIOSYNTHESIS | Genes involved in HS-GAG biosynthesis |
0.0 | 0.2 | REACTOME SYNTHESIS OF PA | Genes involved in Synthesis of PA |