PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
arnt2 | dr11_v1_chr7_+_10701938_10701938 | 0.64 | 3.0e-03 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr14_+_46313135 Show fit | 8.67 |
ENSDART00000172902
|
crystallin, beta A1, like 1 |
|
chr7_-_74090168 Show fit | 8.50 |
ENSDART00000050528
|
tyrosinase-related protein 1a |
|
chr14_+_46313396 Show fit | 8.35 |
ENSDART00000047525
|
crystallin, beta A1, like 1 |
|
chr5_-_23429228 Show fit | 7.88 |
ENSDART00000049291
|
glutamate receptor, ionotropic, AMPA 3a |
|
chr23_-_6641223 Show fit | 7.50 |
ENSDART00000023793
|
major intrinsic protein of lens fiber b |
|
chr5_+_55626693 Show fit | 5.54 |
ENSDART00000168908
ENSDART00000161412 |
neurotrophic tyrosine kinase, receptor, type 2b |
|
chr17_+_10566490 Show fit | 5.53 |
ENSDART00000144408
ENSDART00000137469 |
MGA, MAX dimerization protein a |
|
chr12_-_22540943 Show fit | 5.10 |
ENSDART00000172310
|
zinc finger and BTB domain containing 4 |
|
chr21_+_30194904 Show fit | 4.52 |
ENSDART00000137023
ENSDART00000078403 |
si:ch211-59d17.3 |
|
chr11_+_7324704 Show fit | 4.38 |
ENSDART00000031937
|
DIRAS family, GTP-binding RAS-like 1a |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 17.0 | GO:0002088 | lens development in camera-type eye(GO:0002088) |
0.9 | 8.5 | GO:0042438 | melanin biosynthetic process(GO:0042438) |
0.8 | 7.5 | GO:0006833 | water transport(GO:0006833) |
2.4 | 7.3 | GO:0099540 | synaptic signaling via neuropeptide(GO:0099538) trans-synaptic signaling by neuropeptide(GO:0099540) trans-synaptic signaling by neuropeptide, modulating synaptic transmission(GO:0099551) cellular response to brain-derived neurotrophic factor stimulus(GO:1990416) |
0.2 | 6.1 | GO:0035845 | photoreceptor cell outer segment organization(GO:0035845) |
0.3 | 5.7 | GO:0060079 | excitatory postsynaptic potential(GO:0060079) |
0.4 | 5.6 | GO:0033173 | calcineurin-NFAT signaling cascade(GO:0033173) |
0.2 | 5.5 | GO:0030513 | positive regulation of BMP signaling pathway(GO:0030513) |
0.0 | 5.5 | GO:0034765 | regulation of ion transmembrane transport(GO:0034765) |
0.0 | 5.2 | GO:0006897 | endocytosis(GO:0006897) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 17.3 | GO:0030424 | axon(GO:0030424) |
0.4 | 16.0 | GO:0032281 | AMPA glutamate receptor complex(GO:0032281) |
0.7 | 8.5 | GO:0033162 | melanosome membrane(GO:0033162) chitosome(GO:0045009) |
0.4 | 5.7 | GO:0017146 | NMDA selective glutamate receptor complex(GO:0017146) |
0.2 | 5.5 | GO:0071141 | SMAD protein complex(GO:0071141) |
0.1 | 5.4 | GO:0031225 | anchored component of membrane(GO:0031225) |
0.7 | 5.2 | GO:0071914 | prominosome(GO:0071914) |
0.1 | 4.5 | GO:0030864 | cortical actin cytoskeleton(GO:0030864) |
0.7 | 4.4 | GO:0005955 | calcineurin complex(GO:0005955) |
0.1 | 3.8 | GO:0000159 | protein phosphatase type 2A complex(GO:0000159) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 17.0 | GO:0005212 | structural constituent of eye lens(GO:0005212) |
0.1 | 9.4 | GO:0005245 | voltage-gated calcium channel activity(GO:0005245) |
0.6 | 9.1 | GO:0004971 | AMPA glutamate receptor activity(GO:0004971) |
0.8 | 7.5 | GO:0015250 | water channel activity(GO:0015250) |
2.4 | 7.3 | GO:0060175 | brain-derived neurotrophic factor binding(GO:0048403) brain-derived neurotrophic factor-activated receptor activity(GO:0060175) |
0.1 | 7.1 | GO:0015485 | cholesterol binding(GO:0015485) |
0.3 | 6.2 | GO:0004972 | NMDA glutamate receptor activity(GO:0004972) |
0.2 | 5.0 | GO:0004693 | cyclin-dependent protein serine/threonine kinase activity(GO:0004693) cyclin-dependent protein kinase activity(GO:0097472) |
0.7 | 4.4 | GO:0004723 | calcium-dependent protein serine/threonine phosphatase activity(GO:0004723) calmodulin-dependent protein phosphatase activity(GO:0033192) |
0.2 | 4.4 | GO:0004115 | 3',5'-cyclic-AMP phosphodiesterase activity(GO:0004115) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 4.4 | PID TCR CALCIUM PATHWAY | Calcium signaling in the CD4+ TCR pathway |
0.1 | 2.5 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
0.1 | 2.2 | PID IL8 CXCR1 PATHWAY | IL8- and CXCR1-mediated signaling events |
0.1 | 2.2 | PID EPHA FWDPATHWAY | EPHA forward signaling |
0.0 | 2.2 | PID CMYB PATHWAY | C-MYB transcription factor network |
0.2 | 2.1 | PID ERBB NETWORK PATHWAY | ErbB receptor signaling network |
0.0 | 2.0 | PID DELTA NP63 PATHWAY | Validated transcriptional targets of deltaNp63 isoforms |
0.1 | 1.7 | PID INSULIN GLUCOSE PATHWAY | Insulin-mediated glucose transport |
0.1 | 1.3 | SA PTEN PATHWAY | PTEN is a tumor suppressor that dephosphorylates the lipid messenger phosphatidylinositol triphosphate. |
0.1 | 1.2 | SA B CELL RECEPTOR COMPLEXES | Antigen binding to B cell receptors activates protein tyrosine kinases, such as the Src family, which ultimate activate MAP kinases. |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 4.4 | REACTOME DARPP 32 EVENTS | Genes involved in DARPP-32 events |
0.1 | 2.8 | REACTOME SIGNALING BY ROBO RECEPTOR | Genes involved in Signaling by Robo receptor |
0.0 | 2.8 | REACTOME PEPTIDE LIGAND BINDING RECEPTORS | Genes involved in Peptide ligand-binding receptors |
0.3 | 2.6 | REACTOME PRESYNAPTIC NICOTINIC ACETYLCHOLINE RECEPTORS | Genes involved in Presynaptic nicotinic acetylcholine receptors |
0.0 | 2.6 | REACTOME SIGNALING BY RHO GTPASES | Genes involved in Signaling by Rho GTPases |
0.1 | 2.3 | REACTOME CGMP EFFECTS | Genes involved in cGMP effects |
0.1 | 2.0 | REACTOME GABA A RECEPTOR ACTIVATION | Genes involved in GABA A receptor activation |
0.1 | 2.0 | REACTOME REGULATION OF GENE EXPRESSION IN BETA CELLS | Genes involved in Regulation of gene expression in beta cells |
0.3 | 1.9 | REACTOME DSCAM INTERACTIONS | Genes involved in DSCAM interactions |
0.2 | 1.9 | REACTOME REGULATION OF INSULIN SECRETION BY ACETYLCHOLINE | Genes involved in Regulation of Insulin Secretion by Acetylcholine |