PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
atf1 | dr11_v1_chr6_-_39518489_39518489 | 0.91 | 9.0e-08 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr2_+_11685742 Show fit | 5.64 |
ENSDART00000138562
|
growth regulation by estrogen in breast cancer-like |
|
chr20_+_24448007 Show fit | 4.48 |
ENSDART00000139866
|
si:dkey-273g18.1 |
|
chr21_-_23308286 Show fit | 4.11 |
ENSDART00000184419
|
zinc finger and BTB domain containing 16a |
|
chr16_-_42013858 Show fit | 3.60 |
ENSDART00000045403
|
ets variant 2 |
|
chr11_-_41996957 Show fit | 3.49 |
ENSDART00000055706
|
hairy and enhancer of split-related 15, tandem duplicate 2 |
|
chr5_+_36693859 Show fit | 3.42 |
ENSDART00000019259
|
deltaB |
|
chr21_-_23307653 Show fit | 3.38 |
ENSDART00000140284
ENSDART00000134103 |
zinc finger and BTB domain containing 16a |
|
chr25_+_34845115 Show fit | 3.08 |
ENSDART00000061996
|
transmembrane protein 231 |
|
chr2_+_12255568 Show fit | 2.97 |
ENSDART00000184164
ENSDART00000013454 |
phosphoribosyl transferase domain containing 1 |
|
chr18_+_619619 Show fit | 2.70 |
ENSDART00000159846
|
protogenin homolog a (Gallus gallus) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 79.9 | GO:0006355 | regulation of transcription, DNA-templated(GO:0006355) |
0.7 | 9.5 | GO:0032481 | positive regulation of type I interferon production(GO:0032481) |
0.1 | 5.9 | GO:0032880 | regulation of protein localization(GO:0032880) |
0.1 | 5.4 | GO:0000380 | alternative mRNA splicing, via spliceosome(GO:0000380) |
0.1 | 5.2 | GO:0045930 | negative regulation of mitotic cell cycle(GO:0045930) |
0.0 | 4.5 | GO:0008380 | RNA splicing(GO:0008380) |
0.1 | 4.3 | GO:0001569 | patterning of blood vessels(GO:0001569) |
0.1 | 4.2 | GO:0030901 | midbrain development(GO:0030901) |
1.4 | 4.1 | GO:0006480 | N-terminal protein amino acid methylation(GO:0006480) |
1.0 | 3.9 | GO:0033313 | meiotic cell cycle checkpoint(GO:0033313) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 98.9 | GO:0005634 | nucleus(GO:0005634) |
0.0 | 29.2 | GO:0005654 | nucleoplasm(GO:0005654) |
0.5 | 7.9 | GO:0036038 | MKS complex(GO:0036038) |
0.8 | 5.8 | GO:0005662 | DNA replication factor A complex(GO:0005662) |
0.0 | 5.7 | GO:0005730 | nucleolus(GO:0005730) |
0.1 | 5.5 | GO:0032432 | actin filament bundle(GO:0032432) |
0.1 | 4.7 | GO:0019005 | SCF ubiquitin ligase complex(GO:0019005) |
0.0 | 4.6 | GO:0005819 | spindle(GO:0005819) |
0.0 | 4.0 | GO:0070160 | bicellular tight junction(GO:0005923) occluding junction(GO:0070160) |
1.2 | 3.7 | GO:1990077 | primosome complex(GO:1990077) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 92.1 | GO:0000981 | RNA polymerase II transcription factor activity, sequence-specific DNA binding(GO:0000981) |
0.1 | 12.2 | GO:0001227 | transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001227) |
0.0 | 8.0 | GO:0051015 | actin filament binding(GO:0051015) |
0.0 | 6.9 | GO:0003682 | chromatin binding(GO:0003682) |
0.1 | 5.4 | GO:0031491 | nucleosome binding(GO:0031491) |
0.1 | 5.0 | GO:0016538 | cyclin-dependent protein serine/threonine kinase regulator activity(GO:0016538) |
0.2 | 4.8 | GO:0005112 | Notch binding(GO:0005112) |
0.3 | 4.7 | GO:0004169 | dolichyl-phosphate-mannose-protein mannosyltransferase activity(GO:0004169) |
1.4 | 4.1 | GO:0071885 | N-terminal protein N-methyltransferase activity(GO:0071885) |
0.2 | 4.1 | GO:0061608 | nuclear import signal receptor activity(GO:0061608) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 6.0 | PID BARD1 PATHWAY | BARD1 signaling events |
0.2 | 5.9 | PID FANCONI PATHWAY | Fanconi anemia pathway |
0.1 | 4.2 | PID AURORA B PATHWAY | Aurora B signaling |
0.1 | 3.9 | ST GAQ PATHWAY | G alpha q Pathway |
0.0 | 3.6 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
0.3 | 3.5 | PID P38 GAMMA DELTA PATHWAY | Signaling mediated by p38-gamma and p38-delta |
0.1 | 3.4 | PID INTEGRIN3 PATHWAY | Beta3 integrin cell surface interactions |
0.0 | 2.7 | PID CMYB PATHWAY | C-MYB transcription factor network |
0.0 | 2.4 | PID E2F PATHWAY | E2F transcription factor network |
0.1 | 1.9 | PID SMAD2 3PATHWAY | Regulation of cytoplasmic and nuclear SMAD2/3 signaling |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 6.4 | REACTOME PROCESSIVE SYNTHESIS ON THE LAGGING STRAND | Genes involved in Processive synthesis on the lagging strand |
0.2 | 5.1 | REACTOME G0 AND EARLY G1 | Genes involved in G0 and Early G1 |
0.1 | 4.4 | REACTOME MRNA 3 END PROCESSING | Genes involved in mRNA 3'-end processing |
0.1 | 4.1 | REACTOME METABOLISM OF NON CODING RNA | Genes involved in Metabolism of non-coding RNA |
0.1 | 3.9 | REACTOME GLYCOSPHINGOLIPID METABOLISM | Genes involved in Glycosphingolipid metabolism |
0.2 | 3.4 | REACTOME HS GAG DEGRADATION | Genes involved in HS-GAG degradation |
0.1 | 3.3 | REACTOME CROSS PRESENTATION OF SOLUBLE EXOGENOUS ANTIGENS ENDOSOMES | Genes involved in Cross-presentation of soluble exogenous antigens (endosomes) |
0.2 | 3.1 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
0.1 | 2.9 | REACTOME ELONGATION ARREST AND RECOVERY | Genes involved in Elongation arrest and recovery |
0.1 | 2.9 | REACTOME CYTOSOLIC TRNA AMINOACYLATION | Genes involved in Cytosolic tRNA aminoacylation |