PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
atf3 | dr11_v1_chr20_+_37794633_37794633 | -0.66 | 2.2e-03 | Click! |
jdp2b | dr11_v1_chr20_+_46586678_46586692 | -0.29 | 2.3e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr16_-_45910050 Show fit | 6.51 |
ENSDART00000133213
|
antifreeze protein type IV |
|
chr3_-_19367081 Show fit | 3.65 |
ENSDART00000191369
|
sphingosine-1-phosphate receptor 5a |
|
chr12_-_21684197 Show fit | 3.01 |
ENSDART00000152999
ENSDART00000153109 ENSDART00000148698 |
essential meiotic structure-specific endonuclease 1 |
|
chr17_+_37932706 Show fit | 2.91 |
ENSDART00000075941
|
pleckstrin homology domain containing, family H (with MyTH4 domain) member 1 |
|
chr21_+_20901505 Show fit | 2.88 |
ENSDART00000132741
|
complement component 7b |
|
chr18_+_619619 Show fit | 2.86 |
ENSDART00000159846
|
protogenin homolog a (Gallus gallus) |
|
chr8_-_50259448 Show fit | 2.81 |
ENSDART00000146056
|
NK3 homeobox 1 |
|
chr1_+_227241 Show fit | 2.73 |
ENSDART00000003317
|
transcription factor Dp-1, b |
|
chr13_-_37474989 Show fit | 2.65 |
ENSDART00000114136
|
WD repeat domain 89 |
|
chr11_-_41996957 Show fit | 2.59 |
ENSDART00000055706
|
hairy and enhancer of split-related 15, tandem duplicate 2 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 43.8 | GO:0006355 | regulation of transcription, DNA-templated(GO:0006355) |
0.0 | 14.3 | GO:0008380 | RNA splicing(GO:0008380) |
0.2 | 7.5 | GO:0060030 | dorsal convergence(GO:0060030) |
0.2 | 5.3 | GO:0001569 | patterning of blood vessels(GO:0001569) |
0.1 | 4.8 | GO:1902806 | regulation of cell cycle G1/S phase transition(GO:1902806) |
0.3 | 4.7 | GO:0000463 | maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)(GO:0000463) |
0.4 | 4.6 | GO:0031573 | intra-S DNA damage checkpoint(GO:0031573) |
0.1 | 4.6 | GO:0006261 | DNA-dependent DNA replication(GO:0006261) |
1.1 | 4.5 | GO:0032790 | ribosome disassembly(GO:0032790) |
0.0 | 4.4 | GO:0006396 | RNA processing(GO:0006396) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 66.1 | GO:0005634 | nucleus(GO:0005634) |
0.0 | 9.0 | GO:0005730 | nucleolus(GO:0005730) |
0.0 | 8.3 | GO:0005654 | nucleoplasm(GO:0005654) |
0.1 | 7.6 | GO:0016607 | nuclear speck(GO:0016607) |
0.7 | 5.2 | GO:0031616 | spindle pole centrosome(GO:0031616) |
0.3 | 5.0 | GO:0036038 | MKS complex(GO:0036038) |
1.2 | 4.8 | GO:0008537 | proteasome activator complex(GO:0008537) |
0.1 | 4.5 | GO:0005871 | kinesin complex(GO:0005871) |
0.1 | 4.4 | GO:0000315 | organellar large ribosomal subunit(GO:0000315) mitochondrial large ribosomal subunit(GO:0005762) |
1.2 | 3.6 | GO:0070545 | PeBoW complex(GO:0070545) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 47.6 | GO:0000981 | RNA polymerase II transcription factor activity, sequence-specific DNA binding(GO:0000981) |
0.0 | 15.7 | GO:0003723 | RNA binding(GO:0003723) |
0.0 | 7.2 | GO:0001228 | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001228) |
0.0 | 7.1 | GO:0003677 | DNA binding(GO:0003677) |
0.1 | 6.3 | GO:0003724 | RNA helicase activity(GO:0003724) |
0.0 | 5.6 | GO:0004518 | nuclease activity(GO:0004518) |
0.8 | 4.8 | GO:0061133 | endopeptidase activator activity(GO:0061133) |
0.0 | 4.6 | GO:0005085 | guanyl-nucleotide exchange factor activity(GO:0005085) |
0.2 | 4.4 | GO:0015035 | protein disulfide oxidoreductase activity(GO:0015035) |
0.0 | 4.2 | GO:0051082 | unfolded protein binding(GO:0051082) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 9.6 | PID FANCONI PATHWAY | Fanconi anemia pathway |
0.2 | 7.2 | PID AURORA B PATHWAY | Aurora B signaling |
0.1 | 5.3 | PID E2F PATHWAY | E2F transcription factor network |
0.1 | 2.8 | PID HNF3A PATHWAY | FOXA1 transcription factor network |
0.1 | 2.5 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
0.1 | 2.4 | PID P38 MKK3 6PATHWAY | p38 MAPK signaling pathway |
0.0 | 2.3 | PID P53 DOWNSTREAM PATHWAY | Direct p53 effectors |
0.1 | 2.2 | PID PI3KCI PATHWAY | Class I PI3K signaling events |
0.0 | 2.2 | PID P73PATHWAY | p73 transcription factor network |
0.1 | 2.0 | PID P53 REGULATION PATHWAY | p53 pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 5.2 | REACTOME TRANSPORT OF RIBONUCLEOPROTEINS INTO THE HOST NUCLEUS | Genes involved in Transport of Ribonucleoproteins into the Host Nucleus |
0.3 | 4.9 | REACTOME REPAIR SYNTHESIS FOR GAP FILLING BY DNA POL IN TC NER | Genes involved in Repair synthesis for gap-filling by DNA polymerase in TC-NER |
0.1 | 4.9 | REACTOME APC C CDH1 MEDIATED DEGRADATION OF CDC20 AND OTHER APC C CDH1 TARGETED PROTEINS IN LATE MITOSIS EARLY G1 | Genes involved in APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1 |
0.2 | 4.8 | REACTOME CYTOSOLIC TRNA AMINOACYLATION | Genes involved in Cytosolic tRNA aminoacylation |
0.2 | 4.8 | REACTOME G0 AND EARLY G1 | Genes involved in G0 and Early G1 |
0.1 | 4.6 | REACTOME MITOTIC M M G1 PHASES | Genes involved in Mitotic M-M/G1 phases |
0.2 | 3.2 | REACTOME BRANCHED CHAIN AMINO ACID CATABOLISM | Genes involved in Branched-chain amino acid catabolism |
0.2 | 3.0 | REACTOME RNA POL III TRANSCRIPTION TERMINATION | Genes involved in RNA Polymerase III Transcription Termination |
0.1 | 2.9 | REACTOME GLYCOSPHINGOLIPID METABOLISM | Genes involved in Glycosphingolipid metabolism |
0.5 | 2.7 | REACTOME THE NLRP3 INFLAMMASOME | Genes involved in The NLRP3 inflammasome |