PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
atf5a | dr11_v1_chr5_-_30418636_30418636 | 0.75 | 1.9e-04 | Click! |
atf5b | dr11_v1_chr15_-_17869115_17869115 | -0.33 | 1.6e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr16_-_9802998 Show fit | 2.73 |
ENSDART00000154217
|
TAP binding protein (tapasin)-like |
|
chr15_-_39963009 Show fit | 2.35 |
ENSDART00000157388
|
ly6 domain containing, pigment cell |
|
chr9_-_30190513 Show fit | 2.30 |
ENSDART00000137083
|
interphotoreceptor matrix proteoglycan 2a |
|
chr19_-_5125663 Show fit | 2.26 |
ENSDART00000005547
ENSDART00000132642 |
guanine nucleotide binding protein (G protein), beta polypeptide 3b |
|
chr7_-_28147838 Show fit | 2.10 |
ENSDART00000158921
|
LIM domain only 1 |
|
chr25_+_20216159 Show fit | 1.98 |
ENSDART00000048642
|
troponin T2d, cardiac |
|
chr9_-_23944470 Show fit | 1.83 |
ENSDART00000138754
|
collagen, type VI, alpha 3 |
|
chr4_-_16333944 Show fit | 1.83 |
ENSDART00000079523
|
epiphycan |
|
chr21_-_22115136 Show fit | 1.77 |
ENSDART00000134715
ENSDART00000089246 ENSDART00000139789 |
ELMO/CED-12 domain containing 1 |
|
chr18_+_7283283 Show fit | 1.77 |
ENSDART00000141493
|
si:ch73-86n2.1 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 3.7 | GO:0043547 | positive regulation of GTPase activity(GO:0043547) |
0.2 | 2.7 | GO:0019885 | antigen processing and presentation of endogenous peptide antigen(GO:0002483) antigen processing and presentation of endogenous antigen(GO:0019883) antigen processing and presentation of endogenous peptide antigen via MHC class I(GO:0019885) |
0.0 | 2.6 | GO:0007601 | visual perception(GO:0007601) |
0.1 | 2.3 | GO:0035235 | ionotropic glutamate receptor signaling pathway(GO:0035235) |
0.0 | 2.3 | GO:0007623 | circadian rhythm(GO:0007623) |
0.0 | 2.1 | GO:0007212 | dopamine receptor signaling pathway(GO:0007212) |
0.0 | 2.0 | GO:0006937 | regulation of muscle contraction(GO:0006937) |
0.0 | 1.8 | GO:0008045 | motor neuron axon guidance(GO:0008045) |
0.0 | 1.6 | GO:0008654 | phospholipid biosynthetic process(GO:0008654) |
0.0 | 1.5 | GO:0050708 | regulation of protein secretion(GO:0050708) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 4.4 | GO:0005834 | heterotrimeric G-protein complex(GO:0005834) |
0.0 | 3.5 | GO:0005891 | voltage-gated calcium channel complex(GO:0005891) |
0.3 | 2.3 | GO:0033165 | interphotoreceptor matrix(GO:0033165) |
0.0 | 2.0 | GO:0005861 | troponin complex(GO:0005861) |
0.0 | 1.9 | GO:0030864 | cortical actin cytoskeleton(GO:0030864) |
0.0 | 1.8 | GO:0005871 | kinesin complex(GO:0005871) |
0.0 | 1.8 | GO:0005581 | collagen trimer(GO:0005581) |
0.2 | 1.5 | GO:0016586 | RSC complex(GO:0016586) |
0.1 | 1.5 | GO:0043209 | myelin sheath(GO:0043209) |
0.1 | 1.5 | GO:0031430 | M band(GO:0031430) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 5.8 | GO:0030695 | GTPase regulator activity(GO:0030695) |
0.1 | 2.8 | GO:0005540 | hyaluronic acid binding(GO:0005540) |
0.0 | 2.8 | GO:0004867 | serine-type endopeptidase inhibitor activity(GO:0004867) |
0.2 | 2.3 | GO:0031682 | G-protein gamma-subunit binding(GO:0031682) |
0.4 | 2.1 | GO:0031852 | mu-type opioid receptor binding(GO:0031852) corticotropin-releasing hormone receptor 1 binding(GO:0051430) |
0.1 | 2.1 | GO:0003707 | steroid hormone receptor activity(GO:0003707) |
0.2 | 2.0 | GO:0031013 | troponin C binding(GO:0030172) troponin I binding(GO:0031013) |
0.0 | 2.0 | GO:0005245 | voltage-gated calcium channel activity(GO:0005245) |
0.0 | 1.8 | GO:0003777 | microtubule motor activity(GO:0003777) |
0.1 | 1.7 | GO:0008331 | high voltage-gated calcium channel activity(GO:0008331) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 3.5 | NABA PROTEOGLYCANS | Genes encoding proteoglycans |
0.1 | 2.1 | NABA COLLAGENS | Genes encoding collagen proteins |
0.0 | 1.7 | NABA ECM REGULATORS | Genes encoding enzymes and their regulators involved in the remodeling of the extracellular matrix |
0.0 | 1.5 | PID HDAC CLASSI PATHWAY | Signaling events mediated by HDAC Class I |
0.0 | 0.7 | PID THROMBIN PAR1 PATHWAY | PAR1-mediated thrombin signaling events |
0.0 | 0.7 | PID FOXO PATHWAY | FoxO family signaling |
0.0 | 0.3 | PID ERBB NETWORK PATHWAY | ErbB receptor signaling network |
0.0 | 0.2 | SA G2 AND M PHASES | Cdc25 activates the cdc2/cyclin B complex to induce the G2/M transition. |
0.0 | 0.2 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 3.2 | REACTOME NCAM1 INTERACTIONS | Genes involved in NCAM1 interactions |
0.1 | 1.6 | REACTOME REGULATION OF GENE EXPRESSION IN BETA CELLS | Genes involved in Regulation of gene expression in beta cells |
0.2 | 1.1 | REACTOME DEGRADATION OF THE EXTRACELLULAR MATRIX | Genes involved in Degradation of the extracellular matrix |
0.0 | 1.0 | REACTOME NOTCH1 INTRACELLULAR DOMAIN REGULATES TRANSCRIPTION | Genes involved in NOTCH1 Intracellular Domain Regulates Transcription |
0.0 | 0.7 | REACTOME NRAGE SIGNALS DEATH THROUGH JNK | Genes involved in NRAGE signals death through JNK |
0.0 | 0.6 | REACTOME PROLACTIN RECEPTOR SIGNALING | Genes involved in Prolactin receptor signaling |
0.0 | 0.6 | REACTOME PLATELET CALCIUM HOMEOSTASIS | Genes involved in Platelet calcium homeostasis |
0.0 | 0.5 | REACTOME SYNTHESIS OF PE | Genes involved in Synthesis of PE |
0.0 | 0.5 | REACTOME KERATAN SULFATE BIOSYNTHESIS | Genes involved in Keratan sulfate biosynthesis |
0.0 | 0.5 | REACTOME NUCLEAR RECEPTOR TRANSCRIPTION PATHWAY | Genes involved in Nuclear Receptor transcription pathway |