PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
barhl2 | dr11_v1_chr6_+_24817852_24817852 | -0.55 | 1.5e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr6_-_8362419 Show fit | 5.68 |
ENSDART00000142752
ENSDART00000135810 |
acid phosphatase 5a, tartrate resistant |
|
chr9_-_24031461 Show fit | 3.51 |
ENSDART00000021218
|
ribulose-5-phosphate-3-epimerase |
|
chr21_-_37973819 Show fit | 2.85 |
ENSDART00000133405
|
ripply transcriptional repressor 1 |
|
chr1_-_55248496 Show fit | 2.53 |
ENSDART00000098615
|
nanos homolog 3 |
|
chr21_-_19919020 Show fit | 2.51 |
ENSDART00000147396
|
protein phosphatase 1, regulatory subunit 3B |
|
chr1_-_33645967 Show fit | 2.43 |
ENSDART00000192758
|
claudin g |
|
chr1_+_513986 Show fit | 2.43 |
ENSDART00000109083
ENSDART00000081945 |
thioredoxin-like 4B |
|
chr2_-_42958619 Show fit | 2.22 |
ENSDART00000144317
|
otoconin 90 |
|
chr9_-_32300783 Show fit | 2.13 |
ENSDART00000078596
|
heat shock 60 protein 1 |
|
chr9_-_32300611 Show fit | 2.10 |
ENSDART00000127938
|
heat shock 60 protein 1 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 5.7 | GO:0045453 | bone resorption(GO:0045453) |
1.6 | 4.9 | GO:0019323 | pentose catabolic process(GO:0019323) |
1.1 | 4.2 | GO:0032755 | positive regulation of interleukin-6 production(GO:0032755) protein import into mitochondrial intermembrane space(GO:0045041) |
0.2 | 3.5 | GO:0001731 | formation of translation preinitiation complex(GO:0001731) |
0.0 | 3.4 | GO:0000375 | RNA splicing, via transesterification reactions(GO:0000375) RNA splicing, via transesterification reactions with bulged adenosine as nucleophile(GO:0000377) mRNA splicing, via spliceosome(GO:0000398) |
0.1 | 3.1 | GO:0010499 | proteasomal ubiquitin-independent protein catabolic process(GO:0010499) |
0.6 | 2.9 | GO:0016338 | calcium-independent cell-cell adhesion via plasma membrane cell-adhesion molecules(GO:0016338) |
0.2 | 2.9 | GO:0032525 | somite rostral/caudal axis specification(GO:0032525) |
0.0 | 2.9 | GO:0060271 | cilium morphogenesis(GO:0060271) |
0.8 | 2.5 | GO:0005981 | regulation of glycogen catabolic process(GO:0005981) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 7.6 | GO:0005759 | mitochondrial matrix(GO:0005759) |
0.2 | 4.1 | GO:0005682 | U5 snRNP(GO:0005682) |
0.0 | 3.3 | GO:0005923 | bicellular tight junction(GO:0005923) occluding junction(GO:0070160) |
0.1 | 2.9 | GO:0043186 | P granule(GO:0043186) |
0.2 | 2.8 | GO:0048188 | Set1C/COMPASS complex(GO:0048188) |
0.0 | 2.4 | GO:0005681 | spliceosomal complex(GO:0005681) |
0.2 | 2.3 | GO:0019773 | proteasome core complex, alpha-subunit complex(GO:0019773) |
0.0 | 2.2 | GO:0016607 | nuclear speck(GO:0016607) |
0.1 | 2.1 | GO:0000164 | protein phosphatase type 1 complex(GO:0000164) |
0.1 | 1.9 | GO:0030669 | clathrin coat of endocytic vesicle(GO:0030128) clathrin-coated endocytic vesicle membrane(GO:0030669) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.7 | 5.3 | GO:0003993 | acid phosphatase activity(GO:0003993) |
0.2 | 4.9 | GO:0016857 | racemase and epimerase activity, acting on carbohydrates and derivatives(GO:0016857) |
0.0 | 4.3 | GO:0001594 | trace-amine receptor activity(GO:0001594) |
0.1 | 4.2 | GO:0051087 | chaperone binding(GO:0051087) |
0.1 | 4.0 | GO:0003727 | single-stranded RNA binding(GO:0003727) |
0.0 | 3.9 | GO:0004222 | metalloendopeptidase activity(GO:0004222) |
0.7 | 3.5 | GO:0071074 | eukaryotic initiation factor eIF2 binding(GO:0071074) |
0.0 | 3.4 | GO:0003682 | chromatin binding(GO:0003682) |
0.0 | 3.1 | GO:0004722 | protein serine/threonine phosphatase activity(GO:0004722) |
0.0 | 2.9 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 4.2 | PID TOLL ENDOGENOUS PATHWAY | Endogenous TLR signaling |
0.1 | 3.1 | PID FOXM1 PATHWAY | FOXM1 transcription factor network |
0.1 | 2.5 | PID TELOMERASE PATHWAY | Regulation of Telomerase |
0.1 | 2.2 | PID HDAC CLASSIII PATHWAY | Signaling events mediated by HDAC Class III |
0.1 | 1.8 | PID RANBP2 PATHWAY | Sumoylation by RanBP2 regulates transcriptional repression |
0.1 | 1.4 | PID AURORA A PATHWAY | Aurora A signaling |
0.1 | 1.4 | PID HIF2PATHWAY | HIF-2-alpha transcription factor network |
0.0 | 1.4 | PID ATM PATHWAY | ATM pathway |
0.0 | 1.4 | PID AURORA B PATHWAY | Aurora B signaling |
0.0 | 1.3 | NABA ECM AFFILIATED | Genes encoding proteins affiliated structurally or functionally to extracellular matrix proteins |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 7.1 | REACTOME TRANSLATION | Genes involved in Translation |
0.1 | 6.4 | REACTOME MITOCHONDRIAL PROTEIN IMPORT | Genes involved in Mitochondrial Protein Import |
0.1 | 3.9 | REACTOME MITOTIC PROMETAPHASE | Genes involved in Mitotic Prometaphase |
0.1 | 3.6 | REACTOME G0 AND EARLY G1 | Genes involved in G0 and Early G1 |
0.0 | 3.1 | REACTOME METABOLISM OF CARBOHYDRATES | Genes involved in Metabolism of carbohydrates |
0.1 | 3.0 | REACTOME CDK MEDIATED PHOSPHORYLATION AND REMOVAL OF CDC6 | Genes involved in CDK-mediated phosphorylation and removal of Cdc6 |
0.4 | 1.9 | REACTOME ETHANOL OXIDATION | Genes involved in Ethanol oxidation |
0.0 | 1.9 | REACTOME LOSS OF NLP FROM MITOTIC CENTROSOMES | Genes involved in Loss of Nlp from mitotic centrosomes |
0.1 | 1.8 | REACTOME RESOLUTION OF AP SITES VIA THE SINGLE NUCLEOTIDE REPLACEMENT PATHWAY | Genes involved in Resolution of AP sites via the single-nucleotide replacement pathway |
0.0 | 1.5 | REACTOME BIOSYNTHESIS OF THE N GLYCAN PRECURSOR DOLICHOL LIPID LINKED OLIGOSACCHARIDE LLO AND TRANSFER TO A NASCENT PROTEIN | Genes involved in Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein |