PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
barx1 | dr11_v1_chr11_+_27543093_27543093 | -0.17 | 4.8e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr5_+_24305877 Show fit | 2.56 |
ENSDART00000144226
|
cathepsin L, like |
|
chr12_-_16898140 Show fit | 2.18 |
ENSDART00000152656
|
Cathepsin L1-like |
|
chr12_-_16923162 Show fit | 2.10 |
ENSDART00000106072
|
si:dkey-26g8.5 |
|
chr18_-_49318823 Show fit | 1.82 |
ENSDART00000098419
|
sb:cb81 |
|
chr12_-_16720432 Show fit | 1.82 |
ENSDART00000152261
ENSDART00000152154 |
si:dkey-26g8.4 |
|
chr11_-_35171768 Show fit | 1.69 |
ENSDART00000192896
|
TRAF-interacting protein |
|
chr9_+_21306902 Show fit | 1.50 |
ENSDART00000138554
ENSDART00000004108 |
exportin 4 |
|
chr8_+_28358161 Show fit | 1.44 |
ENSDART00000062682
|
adiponectin receptor 1b |
|
chr7_+_32693890 Show fit | 1.44 |
ENSDART00000121972
|
solute carrier family 39 (zinc transporter), member 13 |
|
chr2_-_42960353 Show fit | 1.41 |
ENSDART00000098303
|
otoconin 90 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.7 | GO:0006506 | GPI anchor biosynthetic process(GO:0006506) |
0.1 | 2.4 | GO:0030490 | maturation of SSU-rRNA(GO:0030490) |
0.0 | 2.4 | GO:0006413 | translational initiation(GO:0006413) |
0.2 | 2.1 | GO:0006611 | protein export from nucleus(GO:0006611) |
0.4 | 1.7 | GO:0021564 | vagus nerve development(GO:0021564) |
0.3 | 1.7 | GO:2000580 | positive regulation of microtubule motor activity(GO:2000576) regulation of ATP-dependent microtubule motor activity, plus-end-directed(GO:2000580) positive regulation of ATP-dependent microtubule motor activity, plus-end-directed(GO:2000582) |
0.3 | 1.6 | GO:0000455 | enzyme-directed rRNA pseudouridine synthesis(GO:0000455) |
0.3 | 1.6 | GO:0019673 | GDP-mannose biosynthetic process(GO:0009298) GDP-mannose metabolic process(GO:0019673) |
0.1 | 1.6 | GO:0031937 | methylation-dependent chromatin silencing(GO:0006346) positive regulation of chromatin silencing(GO:0031937) regulation of methylation-dependent chromatin silencing(GO:0090308) positive regulation of methylation-dependent chromatin silencing(GO:0090309) |
0.3 | 1.5 | GO:0097101 | blood vessel endothelial cell fate specification(GO:0097101) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 4.1 | GO:0005764 | lysosome(GO:0005764) |
0.4 | 2.2 | GO:0000506 | glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex(GO:0000506) |
0.1 | 1.6 | GO:0005847 | mRNA cleavage and polyadenylation specificity factor complex(GO:0005847) |
0.0 | 1.6 | GO:0005643 | nuclear pore(GO:0005643) |
0.0 | 1.6 | GO:0005759 | mitochondrial matrix(GO:0005759) |
0.2 | 1.5 | GO:0044613 | nuclear pore central transport channel(GO:0044613) |
0.2 | 1.4 | GO:0005662 | DNA replication factor A complex(GO:0005662) |
0.1 | 1.4 | GO:0008250 | oligosaccharyltransferase complex(GO:0008250) |
0.1 | 1.4 | GO:0016281 | eukaryotic translation initiation factor 4F complex(GO:0016281) |
0.0 | 1.4 | GO:0005791 | rough endoplasmic reticulum(GO:0005791) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 23.7 | GO:0001012 | RNA polymerase II regulatory region sequence-specific DNA binding(GO:0000977) RNA polymerase II regulatory region DNA binding(GO:0001012) |
0.1 | 4.7 | GO:0001594 | trace-amine receptor activity(GO:0001594) |
0.0 | 4.3 | GO:0004197 | cysteine-type endopeptidase activity(GO:0004197) |
0.2 | 2.9 | GO:0009982 | pseudouridine synthase activity(GO:0009982) |
0.0 | 2.4 | GO:0042393 | histone binding(GO:0042393) |
0.3 | 2.2 | GO:0017176 | phosphatidylinositol N-acetylglucosaminyltransferase activity(GO:0017176) |
0.1 | 2.0 | GO:0015026 | coreceptor activity(GO:0015026) |
0.2 | 1.9 | GO:0005049 | nuclear export signal receptor activity(GO:0005049) |
0.0 | 1.9 | GO:0008408 | 3'-5' exonuclease activity(GO:0008408) |
0.0 | 1.8 | GO:0001227 | transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001227) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.1 | PID FOXM1 PATHWAY | FOXM1 transcription factor network |
0.0 | 1.9 | PID P53 REGULATION PATHWAY | p53 pathway |
0.1 | 1.8 | PID FANCONI PATHWAY | Fanconi anemia pathway |
0.1 | 1.7 | PID BARD1 PATHWAY | BARD1 signaling events |
0.1 | 1.5 | ST TUMOR NECROSIS FACTOR PATHWAY | Tumor Necrosis Factor Pathway. |
0.0 | 1.3 | PID INSULIN PATHWAY | Insulin Pathway |
0.1 | 1.0 | PID TRAIL PATHWAY | TRAIL signaling pathway |
0.0 | 1.0 | PID LKB1 PATHWAY | LKB1 signaling events |
0.1 | 0.9 | SA REG CASCADE OF CYCLIN EXPR | Expression of cyclins regulates progression through the cell cycle by activating cyclin-dependent kinases. |
0.0 | 0.9 | PID AURORA B PATHWAY | Aurora B signaling |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.6 | REACTOME SCFSKP2 MEDIATED DEGRADATION OF P27 P21 | Genes involved in SCF(Skp2)-mediated degradation of p27/p21 |
0.1 | 2.5 | REACTOME SYNTHESIS OF GLYCOSYLPHOSPHATIDYLINOSITOL GPI | Genes involved in Synthesis of glycosylphosphatidylinositol (GPI) |
0.1 | 1.9 | REACTOME SYNTHESIS OF SUBSTRATES IN N GLYCAN BIOSYTHESIS | Genes involved in Synthesis of substrates in N-glycan biosythesis |
0.2 | 1.7 | REACTOME ACTIVATION OF BH3 ONLY PROTEINS | Genes involved in Activation of BH3-only proteins |
0.0 | 1.7 | REACTOME ACTIVATION OF ATR IN RESPONSE TO REPLICATION STRESS | Genes involved in Activation of ATR in response to replication stress |
0.1 | 1.6 | REACTOME CYTOSOLIC TRNA AMINOACYLATION | Genes involved in Cytosolic tRNA aminoacylation |
0.0 | 1.6 | REACTOME MRNA SPLICING | Genes involved in mRNA Splicing |
0.0 | 1.5 | REACTOME ACTIVATION OF CHAPERONE GENES BY XBP1S | Genes involved in Activation of Chaperone Genes by XBP1(S) |
0.1 | 1.4 | REACTOME ASSOCIATION OF LICENSING FACTORS WITH THE PRE REPLICATIVE COMPLEX | Genes involved in Association of licensing factors with the pre-replicative complex |
0.0 | 1.4 | REACTOME MITOCHONDRIAL PROTEIN IMPORT | Genes involved in Mitochondrial Protein Import |