PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
barx2 | dr11_v1_chr18_+_47313715_47313715 | 0.47 | 4.4e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr15_+_46313082 Show fit | 3.30 |
ENSDART00000153830
|
si:ch1073-190k2.1 |
|
chr8_+_23521974 Show fit | 2.90 |
ENSDART00000188130
ENSDART00000129378 |
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Gb |
|
chr11_+_24002503 Show fit | 2.48 |
ENSDART00000164702
|
chitinase, acidic.2 |
|
chr23_-_21446985 Show fit | 2.35 |
ENSDART00000044080
|
hairy-related 12 |
|
chr1_+_52662203 Show fit | 2.20 |
ENSDART00000141530
|
oxysterol binding protein |
|
chr18_-_48983690 Show fit | 2.16 |
ENSDART00000182359
|
|
|
chr18_+_3579829 Show fit | 2.15 |
ENSDART00000158763
ENSDART00000182850 ENSDART00000162754 ENSDART00000178789 ENSDART00000172656 |
leucine-rich repeats and calponin homology (CH) domain containing 3 |
|
chr16_+_28994709 Show fit | 2.11 |
ENSDART00000088023
|
gon-4-like (C. elegans) |
|
chr23_+_40460333 Show fit | 2.06 |
ENSDART00000184658
|
SOGA family member 3b |
|
chr25_+_37126921 Show fit | 1.99 |
ENSDART00000124331
|
si:ch1073-174d20.1 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.9 | GO:1902668 | negative regulation of axon extension involved in axon guidance(GO:0048843) negative regulation of axon guidance(GO:1902668) |
0.2 | 2.5 | GO:0006032 | chitin catabolic process(GO:0006032) |
0.1 | 2.4 | GO:0035336 | long-chain fatty-acyl-CoA metabolic process(GO:0035336) |
0.0 | 2.3 | GO:0010506 | regulation of autophagy(GO:0010506) |
0.4 | 1.9 | GO:0000012 | single strand break repair(GO:0000012) |
0.3 | 1.9 | GO:0048011 | neurotrophin TRK receptor signaling pathway(GO:0048011) |
0.2 | 1.8 | GO:1990845 | adaptive thermogenesis(GO:1990845) |
0.2 | 1.8 | GO:0006857 | oligopeptide transport(GO:0006857) |
0.1 | 1.6 | GO:0035622 | intrahepatic bile duct development(GO:0035622) |
0.4 | 1.5 | GO:0038093 | Fc receptor signaling pathway(GO:0038093) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.6 | GO:0042734 | presynaptic membrane(GO:0042734) |
0.0 | 2.4 | GO:0016459 | myosin complex(GO:0016459) |
0.1 | 2.2 | GO:0097038 | perinuclear endoplasmic reticulum(GO:0097038) |
0.0 | 1.7 | GO:0005891 | voltage-gated calcium channel complex(GO:0005891) |
0.1 | 1.5 | GO:0044666 | MLL3/4 complex(GO:0044666) |
0.0 | 1.4 | GO:0016342 | catenin complex(GO:0016342) |
0.0 | 1.3 | GO:0031903 | peroxisomal membrane(GO:0005778) microbody membrane(GO:0031903) |
0.0 | 1.3 | GO:0030864 | cortical actin cytoskeleton(GO:0030864) |
0.1 | 1.2 | GO:0009925 | basal plasma membrane(GO:0009925) |
0.0 | 1.2 | GO:0005871 | kinesin complex(GO:0005871) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 5.9 | GO:0005085 | guanyl-nucleotide exchange factor activity(GO:0005085) |
0.0 | 3.5 | GO:0005096 | GTPase activator activity(GO:0005096) |
0.1 | 3.4 | GO:0030215 | semaphorin receptor binding(GO:0030215) |
0.0 | 3.1 | GO:0050839 | cell adhesion molecule binding(GO:0050839) |
0.2 | 2.5 | GO:0004568 | chitinase activity(GO:0004568) |
0.1 | 2.2 | GO:0015248 | sterol transporter activity(GO:0015248) |
0.0 | 2.1 | GO:0004222 | metalloendopeptidase activity(GO:0004222) |
0.1 | 1.9 | GO:0015095 | magnesium ion transmembrane transporter activity(GO:0015095) |
0.0 | 1.9 | GO:0001227 | transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001227) |
0.3 | 1.8 | GO:0042936 | dipeptide transporter activity(GO:0042936) dipeptide transmembrane transporter activity(GO:0071916) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.5 | PID ERBB1 INTERNALIZATION PATHWAY | Internalization of ErbB1 |
0.1 | 1.7 | PID ARF6 PATHWAY | Arf6 signaling events |
0.1 | 1.7 | PID BARD1 PATHWAY | BARD1 signaling events |
0.1 | 1.6 | PID S1P S1P1 PATHWAY | S1P1 pathway |
0.0 | 1.6 | NABA ECM AFFILIATED | Genes encoding proteins affiliated structurally or functionally to extracellular matrix proteins |
0.0 | 1.3 | PID FOXM1 PATHWAY | FOXM1 transcription factor network |
0.1 | 1.1 | SA REG CASCADE OF CYCLIN EXPR | Expression of cyclins regulates progression through the cell cycle by activating cyclin-dependent kinases. |
0.0 | 1.1 | PID HNF3A PATHWAY | FOXA1 transcription factor network |
0.0 | 1.1 | PID E2F PATHWAY | E2F transcription factor network |
0.0 | 0.9 | PID AR PATHWAY | Coregulation of Androgen receptor activity |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.2 | REACTOME SPHINGOLIPID DE NOVO BIOSYNTHESIS | Genes involved in Sphingolipid de novo biosynthesis |
0.1 | 2.1 | REACTOME SIGNALING BY HIPPO | Genes involved in Signaling by Hippo |
0.1 | 1.7 | REACTOME GRB2 SOS PROVIDES LINKAGE TO MAPK SIGNALING FOR INTERGRINS | Genes involved in GRB2:SOS provides linkage to MAPK signaling for Intergrins |
0.1 | 1.6 | REACTOME SEMA4D INDUCED CELL MIGRATION AND GROWTH CONE COLLAPSE | Genes involved in Sema4D induced cell migration and growth-cone collapse |
0.1 | 1.3 | REACTOME PEROXISOMAL LIPID METABOLISM | Genes involved in Peroxisomal lipid metabolism |
0.0 | 1.3 | REACTOME DOUBLE STRAND BREAK REPAIR | Genes involved in Double-Strand Break Repair |
0.0 | 1.3 | REACTOME NRAGE SIGNALS DEATH THROUGH JNK | Genes involved in NRAGE signals death through JNK |
0.1 | 1.2 | REACTOME KINESINS | Genes involved in Kinesins |
0.3 | 1.0 | REACTOME ROLE OF SECOND MESSENGERS IN NETRIN1 SIGNALING | Genes involved in Role of second messengers in netrin-1 signaling |
0.1 | 1.0 | REACTOME RESOLUTION OF AP SITES VIA THE SINGLE NUCLEOTIDE REPLACEMENT PATHWAY | Genes involved in Resolution of AP sites via the single-nucleotide replacement pathway |