PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
bbx | dr11_v1_chr10_-_28525611_28525611 | -0.92 | 3.0e-08 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr4_+_12031958 Show fit | 4.51 |
ENSDART00000044154
|
troponin T2c, cardiac |
|
chr21_+_21263988 Show fit | 3.63 |
ENSDART00000089651
ENSDART00000108978 |
coiled-coil domain containing 61 |
|
chr7_+_72003301 Show fit | 3.54 |
ENSDART00000012918
ENSDART00000182268 ENSDART00000185750 |
proteasome 26S subunit, non-ATPase 9 |
|
chr1_+_29858032 Show fit | 3.31 |
ENSDART00000054066
|
zic family member 2 (odd-paired homolog, Drosophila) b |
|
chr12_-_18568834 Show fit | 3.16 |
ENSDART00000039693
|
phosphoglycolate phosphatase |
|
chr8_+_28593707 Show fit | 3.03 |
ENSDART00000097213
|
transcription factor 15 |
|
chr23_+_19670085 Show fit | 2.88 |
ENSDART00000031872
|
potassium channel tetramerization domain containing 6b |
|
chr20_-_25626693 Show fit | 2.83 |
ENSDART00000132247
|
phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase |
|
chr20_-_25626198 Show fit | 2.62 |
ENSDART00000126716
|
phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase |
|
chr17_+_24718272 Show fit | 2.43 |
ENSDART00000007271
|
mitochondrial fission regulator 1-like |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.9 | 8.8 | GO:0006189 | 'de novo' IMP biosynthetic process(GO:0006189) |
0.1 | 4.7 | GO:0060048 | cardiac muscle contraction(GO:0060048) |
0.3 | 4.3 | GO:0043248 | proteasome assembly(GO:0043248) |
0.1 | 3.6 | GO:0098534 | centriole assembly(GO:0098534) |
0.2 | 3.4 | GO:0031297 | replication fork processing(GO:0031297) |
0.5 | 3.3 | GO:0033278 | cell proliferation in midbrain(GO:0033278) |
0.8 | 3.2 | GO:0006114 | glycerol biosynthetic process(GO:0006114) alditol biosynthetic process(GO:0019401) |
0.0 | 2.5 | GO:0042742 | defense response to bacterium(GO:0042742) |
0.0 | 2.5 | GO:0007189 | adenylate cyclase-activating G-protein coupled receptor signaling pathway(GO:0007189) |
0.0 | 2.3 | GO:0043044 | ATP-dependent chromatin remodeling(GO:0043044) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 4.7 | GO:0030864 | cortical actin cytoskeleton(GO:0030864) |
0.3 | 3.6 | GO:0034451 | centriolar satellite(GO:0034451) |
0.5 | 3.4 | GO:0005662 | DNA replication factor A complex(GO:0005662) |
0.1 | 3.1 | GO:0070971 | endoplasmic reticulum exit site(GO:0070971) |
0.0 | 2.7 | GO:0005770 | late endosome(GO:0005770) |
0.2 | 2.3 | GO:0031010 | ISWI-type complex(GO:0031010) |
0.1 | 2.2 | GO:0005861 | troponin complex(GO:0005861) |
0.5 | 2.1 | GO:0033186 | CAF-1 complex(GO:0033186) |
0.0 | 2.1 | GO:0016607 | nuclear speck(GO:0016607) |
0.3 | 2.0 | GO:0005614 | interstitial matrix(GO:0005614) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
2.0 | 7.9 | GO:0004639 | phosphoribosylaminoimidazolesuccinocarboxamide synthase activity(GO:0004639) |
0.0 | 4.6 | GO:0042802 | identical protein binding(GO:0042802) |
0.0 | 4.1 | GO:0042393 | histone binding(GO:0042393) |
0.0 | 2.3 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
0.7 | 2.1 | GO:0008970 | phosphatidylcholine 1-acylhydrolase activity(GO:0008970) |
0.2 | 2.1 | GO:0030172 | troponin C binding(GO:0030172) troponin I binding(GO:0031013) |
0.3 | 2.0 | GO:0033592 | RNA strand annealing activity(GO:0033592) RNA strand-exchange activity(GO:0034057) |
0.3 | 2.0 | GO:0001948 | glycoprotein binding(GO:0001948) proteoglycan binding(GO:0043394) |
0.0 | 1.9 | GO:0030145 | manganese ion binding(GO:0030145) |
0.2 | 1.8 | GO:0017091 | AU-rich element binding(GO:0017091) mRNA 3'-UTR AU-rich region binding(GO:0035925) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 4.6 | ST GAQ PATHWAY | G alpha q Pathway |
0.0 | 1.5 | PID IL1 PATHWAY | IL1-mediated signaling events |
0.1 | 1.3 | PID EPHA2 FWD PATHWAY | EPHA2 forward signaling |
0.0 | 0.9 | PID PLK1 PATHWAY | PLK1 signaling events |
0.0 | 0.7 | PID RHOA REG PATHWAY | Regulation of RhoA activity |
0.0 | 0.5 | PID GLYPICAN 1PATHWAY | Glypican 1 network |
0.0 | 0.4 | PID RXR VDR PATHWAY | RXR and RAR heterodimerization with other nuclear receptor |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.6 | 8.8 | REACTOME PURINE RIBONUCLEOSIDE MONOPHOSPHATE BIOSYNTHESIS | Genes involved in Purine ribonucleoside monophosphate biosynthesis |
0.1 | 3.5 | REACTOME CROSS PRESENTATION OF SOLUBLE EXOGENOUS ANTIGENS ENDOSOMES | Genes involved in Cross-presentation of soluble exogenous antigens (endosomes) |
0.0 | 2.8 | REACTOME ACTIVATION OF THE MRNA UPON BINDING OF THE CAP BINDING COMPLEX AND EIFS AND SUBSEQUENT BINDING TO 43S | Genes involved in Activation of the mRNA upon binding of the cap-binding complex and eIFs, and subsequent binding to 43S |
0.1 | 1.7 | REACTOME CONVERSION FROM APC C CDC20 TO APC C CDH1 IN LATE ANAPHASE | Genes involved in Conversion from APC/C:Cdc20 to APC/C:Cdh1 in late anaphase |
0.3 | 1.2 | REACTOME ACYL CHAIN REMODELLING OF PI | Genes involved in Acyl chain remodelling of PI |
0.1 | 1.1 | REACTOME METABOLISM OF POLYAMINES | Genes involved in Metabolism of polyamines |
0.0 | 1.1 | REACTOME PEPTIDE LIGAND BINDING RECEPTORS | Genes involved in Peptide ligand-binding receptors |
0.1 | 0.9 | REACTOME SYNTHESIS OF VERY LONG CHAIN FATTY ACYL COAS | Genes involved in Synthesis of very long-chain fatty acyl-CoAs |
0.0 | 0.9 | REACTOME LOSS OF NLP FROM MITOTIC CENTROSOMES | Genes involved in Loss of Nlp from mitotic centrosomes |
0.0 | 0.7 | REACTOME 3 UTR MEDIATED TRANSLATIONAL REGULATION | Genes involved in 3' -UTR-mediated translational regulation |