PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
bcl11aa | dr11_v1_chr13_+_25846528_25846528 | 0.52 | 2.3e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr16_+_18974064 Show fit | 2.41 |
ENSDART00000079248
|
solute carrier family 6 (neutral amino acid transporter), member 19b |
|
chr22_-_31517300 Show fit | 1.49 |
ENSDART00000164799
|
solute carrier family 6 (neurotransmitter transporter), member 6b |
|
chr16_-_13612650 Show fit | 1.43 |
ENSDART00000080372
|
D site albumin promoter binding protein b |
|
chr9_-_44939104 Show fit | 1.38 |
ENSDART00000192903
|
villin 1 |
|
chr5_-_18046053 Show fit | 1.37 |
ENSDART00000144898
|
ring finger protein 215 |
|
chr15_+_39977461 Show fit | 1.33 |
ENSDART00000063786
|
calcium binding protein 39 |
|
chr18_+_8805575 Show fit | 1.20 |
ENSDART00000137098
|
IMP (inosine 5'-monophosphate) dehydrogenase 1a |
|
chr5_-_38384289 Show fit | 1.08 |
ENSDART00000135260
|
misshapen-like kinase 1 |
|
chr2_+_22694382 Show fit | 1.04 |
ENSDART00000139196
|
kinesin family member 1Ab |
|
chr7_+_49865049 Show fit | 0.99 |
ENSDART00000164165
|
solute carrier family 1 (glial high affinity glutamate transporter), member 2a |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.6 | GO:0035725 | sodium ion transmembrane transport(GO:0035725) |
0.0 | 1.5 | GO:0072348 | sulfur compound transport(GO:0072348) |
0.3 | 1.4 | GO:2000392 | lamellipodium morphogenesis(GO:0072673) regulation of lamellipodium morphogenesis(GO:2000392) |
0.1 | 1.4 | GO:0006896 | Golgi to vacuole transport(GO:0006896) |
0.0 | 1.3 | GO:0032012 | ARF protein signal transduction(GO:0032011) regulation of ARF protein signal transduction(GO:0032012) |
0.1 | 1.2 | GO:0006177 | GMP biosynthetic process(GO:0006177) GMP metabolic process(GO:0046037) |
0.0 | 1.2 | GO:0050919 | negative chemotaxis(GO:0050919) |
0.0 | 1.1 | GO:0031532 | actin cytoskeleton reorganization(GO:0031532) |
0.1 | 1.0 | GO:0046520 | sphingoid biosynthetic process(GO:0046520) |
0.0 | 0.9 | GO:0031581 | hemidesmosome assembly(GO:0031581) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 1.4 | GO:0032433 | filopodium tip(GO:0032433) |
0.1 | 1.4 | GO:0017119 | Golgi transport complex(GO:0017119) |
0.0 | 1.3 | GO:0000118 | histone deacetylase complex(GO:0000118) |
0.3 | 1.0 | GO:0044316 | cone cell pedicle(GO:0044316) |
0.1 | 0.9 | GO:0030056 | hemidesmosome(GO:0030056) |
0.0 | 0.9 | GO:1902711 | GABA receptor complex(GO:1902710) GABA-A receptor complex(GO:1902711) |
0.0 | 0.9 | GO:0055038 | recycling endosome membrane(GO:0055038) |
0.1 | 0.8 | GO:0005826 | actomyosin contractile ring(GO:0005826) |
0.0 | 0.8 | GO:0035102 | PRC1 complex(GO:0035102) |
0.0 | 0.8 | GO:0005811 | lipid particle(GO:0005811) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 3.4 | GO:0015293 | symporter activity(GO:0015293) |
0.0 | 1.5 | GO:0005343 | organic acid:sodium symporter activity(GO:0005343) |
0.0 | 1.4 | GO:0005546 | phosphatidylinositol-4,5-bisphosphate binding(GO:0005546) |
0.0 | 1.3 | GO:0043539 | protein serine/threonine kinase activator activity(GO:0043539) |
0.2 | 1.2 | GO:0003938 | IMP dehydrogenase activity(GO:0003938) |
0.2 | 1.0 | GO:0017040 | ceramidase activity(GO:0017040) |
0.0 | 1.0 | GO:0008574 | ATP-dependent microtubule motor activity, plus-end-directed(GO:0008574) |
0.1 | 0.9 | GO:0030507 | spectrin binding(GO:0030507) |
0.1 | 0.9 | GO:0030506 | ankyrin binding(GO:0030506) |
0.0 | 0.9 | GO:0031267 | small GTPase binding(GO:0031267) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.4 | PID HDAC CLASSII PATHWAY | Signaling events mediated by HDAC Class II |
0.0 | 1.0 | PID LKB1 PATHWAY | LKB1 signaling events |
0.1 | 0.5 | PID ARF6 DOWNSTREAM PATHWAY | Arf6 downstream pathway |
0.0 | 0.5 | PID MAPK TRK PATHWAY | Trk receptor signaling mediated by the MAPK pathway |
0.0 | 0.4 | PID FRA PATHWAY | Validated transcriptional targets of AP1 family members Fra1 and Fra2 |
0.0 | 0.3 | SA PROGRAMMED CELL DEATH | Programmed cell death, or apoptosis, eliminates damaged or unneeded cells. |
0.0 | 0.3 | PID P38 GAMMA DELTA PATHWAY | Signaling mediated by p38-gamma and p38-delta |
0.0 | 0.3 | PID P38 MKK3 6PATHWAY | p38 MAPK signaling pathway |
0.0 | 0.3 | PID INTEGRIN A4B1 PATHWAY | Alpha4 beta1 integrin signaling events |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.3 | REACTOME REGULATION OF AMPK ACTIVITY VIA LKB1 | Genes involved in Regulation of AMPK activity via LKB1 |
0.0 | 1.0 | REACTOME DOWNREGULATION OF SMAD2 3 SMAD4 TRANSCRIPTIONAL ACTIVITY | Genes involved in Downregulation of SMAD2/3:SMAD4 transcriptional activity |
0.0 | 1.0 | REACTOME SPHINGOLIPID DE NOVO BIOSYNTHESIS | Genes involved in Sphingolipid de novo biosynthesis |
0.0 | 0.8 | REACTOME GLYCEROPHOSPHOLIPID BIOSYNTHESIS | Genes involved in Glycerophospholipid biosynthesis |
0.0 | 0.7 | REACTOME VOLTAGE GATED POTASSIUM CHANNELS | Genes involved in Voltage gated Potassium channels |
0.0 | 0.6 | REACTOME NOTCH1 INTRACELLULAR DOMAIN REGULATES TRANSCRIPTION | Genes involved in NOTCH1 Intracellular Domain Regulates Transcription |
0.0 | 0.5 | REACTOME IONOTROPIC ACTIVITY OF KAINATE RECEPTORS | Genes involved in Ionotropic activity of Kainate Receptors |
0.0 | 0.5 | REACTOME CREB PHOSPHORYLATION THROUGH THE ACTIVATION OF RAS | Genes involved in CREB phosphorylation through the activation of Ras |
0.0 | 0.4 | REACTOME NCAM1 INTERACTIONS | Genes involved in NCAM1 interactions |
0.1 | 0.3 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |