PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
bsx | dr11_v1_chr10_-_29892486_29892486 | 0.41 | 8.0e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr8_-_50888806 Show fit | 0.92 |
ENSDART00000053750
|
acyl-CoA synthetase long chain family member 2 |
|
chr8_+_30452945 Show fit | 0.80 |
ENSDART00000062303
|
forkhead box D5 |
|
chr16_+_29509133 Show fit | 0.75 |
ENSDART00000112116
|
cathepsin S, ortholog2, tandem duplicate 1 |
|
chr18_-_33979693 Show fit | 0.74 |
ENSDART00000021215
|
si:ch211-203b20.7 |
|
chr19_+_15440841 Show fit | 0.74 |
ENSDART00000182329
|
lin-28 homolog A (C. elegans) |
|
chr23_+_38251864 Show fit | 0.73 |
ENSDART00000183498
ENSDART00000129593 |
zinc finger protein 217 |
|
chr22_+_18315490 Show fit | 0.73 |
ENSDART00000160413
|
GATA zinc finger domain containing 2Ab |
|
chr21_-_37973819 Show fit | 0.71 |
ENSDART00000133405
|
ripply transcriptional repressor 1 |
|
chr24_+_39638555 Show fit | 0.69 |
ENSDART00000078313
|
LUC7-like (S. cerevisiae) |
|
chr15_-_20233105 Show fit | 0.68 |
ENSDART00000123910
|
protein phosphatase 1, regulatory (inhibitor) subunit 14Ab |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.5 | GO:0032525 | somite rostral/caudal axis specification(GO:0032525) |
0.0 | 1.0 | GO:0032233 | positive regulation of actin filament bundle assembly(GO:0032233) |
0.0 | 1.0 | GO:0006376 | mRNA splice site selection(GO:0006376) |
0.1 | 0.9 | GO:0007076 | mitotic chromosome condensation(GO:0007076) |
0.0 | 0.9 | GO:0001757 | somite specification(GO:0001757) segment specification(GO:0007379) |
0.0 | 0.9 | GO:0035338 | long-chain fatty-acyl-CoA biosynthetic process(GO:0035338) |
0.3 | 0.8 | GO:0021519 | optic cup formation involved in camera-type eye development(GO:0003408) spinal cord association neuron specification(GO:0021519) |
0.2 | 0.8 | GO:0051292 | nuclear pore complex assembly(GO:0051292) |
0.2 | 0.7 | GO:0006409 | tRNA export from nucleus(GO:0006409) tRNA-containing ribonucleoprotein complex export from nucleus(GO:0071431) |
0.0 | 0.7 | GO:0061074 | regulation of neural retina development(GO:0061074) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.2 | GO:0090568 | nuclear transcriptional repressor complex(GO:0090568) |
0.0 | 1.0 | GO:0030139 | endocytic vesicle(GO:0030139) |
0.0 | 0.9 | GO:0034399 | nuclear periphery(GO:0034399) |
0.2 | 0.7 | GO:0032545 | CURI complex(GO:0032545) UTP-C complex(GO:0034456) |
0.0 | 0.7 | GO:0005685 | U1 snRNP(GO:0005685) |
0.1 | 0.6 | GO:0000796 | condensin complex(GO:0000796) |
0.0 | 0.6 | GO:0017053 | transcriptional repressor complex(GO:0017053) |
0.0 | 0.6 | GO:0033116 | endoplasmic reticulum-Golgi intermediate compartment membrane(GO:0033116) |
0.0 | 0.6 | GO:0043186 | P granule(GO:0043186) |
0.0 | 0.5 | GO:0001750 | photoreceptor outer segment(GO:0001750) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.0 | GO:0004865 | protein serine/threonine phosphatase inhibitor activity(GO:0004865) |
0.1 | 0.9 | GO:0047676 | arachidonate-CoA ligase activity(GO:0047676) |
0.0 | 0.8 | GO:0017056 | structural constituent of nuclear pore(GO:0017056) |
0.0 | 0.7 | GO:0031729 | CCR1 chemokine receptor binding(GO:0031726) CCR4 chemokine receptor binding(GO:0031729) |
0.0 | 0.7 | GO:0003727 | single-stranded RNA binding(GO:0003727) |
0.0 | 0.6 | GO:0016857 | racemase and epimerase activity, acting on carbohydrates and derivatives(GO:0016857) |
0.1 | 0.5 | GO:0000700 | mismatch base pair DNA N-glycosylase activity(GO:0000700) pyrimidine-specific mismatch base pair DNA N-glycosylase activity(GO:0008263) |
0.0 | 0.5 | GO:0008139 | nuclear localization sequence binding(GO:0008139) |
0.0 | 0.5 | GO:0070491 | repressing transcription factor binding(GO:0070491) |
0.0 | 0.5 | GO:0008020 | G-protein coupled photoreceptor activity(GO:0008020) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.4 | PID AURORA B PATHWAY | Aurora B signaling |
0.0 | 1.2 | PID NOTCH PATHWAY | Notch signaling pathway |
0.0 | 0.6 | PID P38 GAMMA DELTA PATHWAY | Signaling mediated by p38-gamma and p38-delta |
0.0 | 0.4 | PID MET PATHWAY | Signaling events mediated by Hepatocyte Growth Factor Receptor (c-Met) |
0.0 | 0.3 | PID INTEGRIN A4B1 PATHWAY | Alpha4 beta1 integrin signaling events |
0.0 | 0.2 | PID VEGF VEGFR PATHWAY | VEGF and VEGFR signaling network |
0.0 | 0.1 | PID ECADHERIN KERATINOCYTE PATHWAY | E-cadherin signaling in keratinocytes |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.0 | REACTOME TRANSPORT OF RIBONUCLEOPROTEINS INTO THE HOST NUCLEUS | Genes involved in Transport of Ribonucleoproteins into the Host Nucleus |
0.0 | 0.8 | REACTOME ACTIVATED NOTCH1 TRANSMITS SIGNAL TO THE NUCLEUS | Genes involved in Activated NOTCH1 Transmits Signal to the Nucleus |
0.1 | 0.6 | REACTOME HORMONE SENSITIVE LIPASE HSL MEDIATED TRIACYLGLYCEROL HYDROLYSIS | Genes involved in Hormone-sensitive lipase (HSL)-mediated triacylglycerol hydrolysis |
0.0 | 0.6 | REACTOME PRE NOTCH TRANSCRIPTION AND TRANSLATION | Genes involved in Pre-NOTCH Transcription and Translation |
0.0 | 0.4 | REACTOME FGFR4 LIGAND BINDING AND ACTIVATION | Genes involved in FGFR4 ligand binding and activation |
0.0 | 0.4 | REACTOME REMOVAL OF THE FLAP INTERMEDIATE FROM THE C STRAND | Genes involved in Removal of the Flap Intermediate from the C-strand |
0.0 | 0.4 | REACTOME METABOLISM OF PORPHYRINS | Genes involved in Metabolism of porphyrins |
0.1 | 0.3 | REACTOME ACYL CHAIN REMODELLING OF PI | Genes involved in Acyl chain remodelling of PI |
0.0 | 0.3 | REACTOME SYNTHESIS OF PIPS AT THE LATE ENDOSOME MEMBRANE | Genes involved in Synthesis of PIPs at the late endosome membrane |
0.0 | 0.3 | REACTOME ASSOCIATION OF LICENSING FACTORS WITH THE PRE REPLICATIVE COMPLEX | Genes involved in Association of licensing factors with the pre-replicative complex |