PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
cdc5l | dr11_v1_chr17_+_5061135_5061135 | 0.82 | 1.6e-05 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr16_+_29509133 Show fit | 7.20 |
ENSDART00000112116
|
cathepsin S, ortholog2, tandem duplicate 1 |
|
chr5_-_61652254 Show fit | 6.83 |
ENSDART00000097364
|
draculin |
|
chr5_+_50879545 Show fit | 5.90 |
ENSDART00000128402
|
nucleolar protein 6 (RNA-associated) |
|
chr21_-_44512893 Show fit | 5.90 |
ENSDART00000166853
|
zgc:136410 |
|
chr11_+_41981959 Show fit | 5.55 |
ENSDART00000055707
|
hairy and enhancer of split-related 15, tandem duplicate 1 |
|
chr7_+_24881680 Show fit | 5.49 |
ENSDART00000058843
|
kelch repeat-containing protein |
|
chr20_-_26491567 Show fit | 5.42 |
ENSDART00000147154
|
methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like |
|
chr8_-_16725573 Show fit | 5.36 |
ENSDART00000049676
|
DEP domain containing 1a |
|
chr9_+_34397516 Show fit | 5.14 |
ENSDART00000011304
ENSDART00000192973 |
mediator complex subunit 14 |
|
chr4_+_35553514 Show fit | 4.96 |
ENSDART00000182938
|
|
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.7 | 9.1 | GO:0032309 | icosanoid secretion(GO:0032309) arachidonic acid secretion(GO:0050482) arachidonate transport(GO:1903963) |
0.3 | 8.8 | GO:0019827 | stem cell population maintenance(GO:0019827) |
0.1 | 8.4 | GO:0016072 | rRNA processing(GO:0006364) rRNA metabolic process(GO:0016072) |
0.1 | 7.9 | GO:0001702 | gastrulation with mouth forming second(GO:0001702) |
0.1 | 7.6 | GO:0016575 | histone deacetylation(GO:0016575) |
0.1 | 7.2 | GO:0016579 | protein deubiquitination(GO:0016579) |
0.1 | 7.1 | GO:0006413 | translational initiation(GO:0006413) |
0.5 | 6.6 | GO:0072595 | maintenance of protein localization in organelle(GO:0072595) |
0.2 | 6.2 | GO:0007548 | sex differentiation(GO:0007548) |
0.1 | 6.0 | GO:0008033 | tRNA processing(GO:0008033) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 100.6 | GO:0005634 | nucleus(GO:0005634) |
0.3 | 10.0 | GO:0017053 | transcriptional repressor complex(GO:0017053) |
0.0 | 9.3 | GO:0005730 | nucleolus(GO:0005730) |
1.3 | 8.8 | GO:0070847 | core mediator complex(GO:0070847) |
0.2 | 7.6 | GO:0000315 | organellar large ribosomal subunit(GO:0000315) mitochondrial large ribosomal subunit(GO:0005762) |
0.1 | 7.5 | GO:0000118 | histone deacetylase complex(GO:0000118) |
0.0 | 7.5 | GO:0005819 | spindle(GO:0005819) |
2.0 | 5.9 | GO:0032545 | CURI complex(GO:0032545) UTP-C complex(GO:0034456) |
0.5 | 5.4 | GO:0030688 | preribosome, small subunit precursor(GO:0030688) |
0.1 | 5.2 | GO:0019005 | SCF ubiquitin ligase complex(GO:0019005) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 74.3 | GO:0000981 | RNA polymerase II transcription factor activity, sequence-specific DNA binding(GO:0000981) |
0.0 | 14.1 | GO:0003677 | DNA binding(GO:0003677) |
0.0 | 13.2 | GO:0003723 | RNA binding(GO:0003723) |
0.1 | 10.6 | GO:0001228 | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001228) |
0.4 | 9.1 | GO:0004623 | phospholipase A2 activity(GO:0004623) |
0.0 | 9.1 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
0.1 | 9.0 | GO:0003724 | RNA helicase activity(GO:0003724) |
0.1 | 8.9 | GO:0004843 | thiol-dependent ubiquitin-specific protease activity(GO:0004843) thiol-dependent ubiquitinyl hydrolase activity(GO:0036459) ubiquitinyl hydrolase activity(GO:0101005) |
0.3 | 7.4 | GO:0017056 | structural constituent of nuclear pore(GO:0017056) |
0.1 | 7.2 | GO:0003714 | transcription corepressor activity(GO:0003714) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 16.8 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
0.2 | 12.0 | PID P53 REGULATION PATHWAY | p53 pathway |
0.2 | 9.1 | PID PLK1 PATHWAY | PLK1 signaling events |
0.1 | 7.5 | PID AR PATHWAY | Coregulation of Androgen receptor activity |
0.2 | 6.3 | PID TAP63 PATHWAY | Validated transcriptional targets of TAp63 isoforms |
0.1 | 5.2 | PID BETA CATENIN NUC PATHWAY | Regulation of nuclear beta catenin signaling and target gene transcription |
0.1 | 4.8 | PID P73PATHWAY | p73 transcription factor network |
0.1 | 4.1 | PID AURORA B PATHWAY | Aurora B signaling |
0.1 | 4.1 | PID RB 1PATHWAY | Regulation of retinoblastoma protein |
0.0 | 3.8 | NABA ECM AFFILIATED | Genes encoding proteins affiliated structurally or functionally to extracellular matrix proteins |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 13.5 | REACTOME TRANSCRIPTIONAL REGULATION OF WHITE ADIPOCYTE DIFFERENTIATION | Genes involved in Transcriptional Regulation of White Adipocyte Differentiation |
0.2 | 10.4 | REACTOME APC C CDH1 MEDIATED DEGRADATION OF CDC20 AND OTHER APC C CDH1 TARGETED PROTEINS IN LATE MITOSIS EARLY G1 | Genes involved in APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1 |
0.2 | 7.2 | REACTOME MEIOTIC SYNAPSIS | Genes involved in Meiotic Synapsis |
0.1 | 6.9 | REACTOME MITOCHONDRIAL PROTEIN IMPORT | Genes involved in Mitochondrial Protein Import |
0.2 | 6.8 | REACTOME FORMATION OF TRANSCRIPTION COUPLED NER TC NER REPAIR COMPLEX | Genes involved in Formation of transcription-coupled NER (TC-NER) repair complex |
0.2 | 6.5 | REACTOME NEP NS2 INTERACTS WITH THE CELLULAR EXPORT MACHINERY | Genes involved in NEP/NS2 Interacts with the Cellular Export Machinery |
0.2 | 6.1 | REACTOME G0 AND EARLY G1 | Genes involved in G0 and Early G1 |
0.1 | 6.0 | REACTOME METABOLISM OF VITAMINS AND COFACTORS | Genes involved in Metabolism of vitamins and cofactors |
0.1 | 5.8 | REACTOME NRAGE SIGNALS DEATH THROUGH JNK | Genes involved in NRAGE signals death through JNK |
0.2 | 4.9 | REACTOME CONVERSION FROM APC C CDC20 TO APC C CDH1 IN LATE ANAPHASE | Genes involved in Conversion from APC/C:Cdc20 to APC/C:Cdh1 in late anaphase |