PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
cdx1b | dr11_v1_chr21_-_43992027_43992027 | -0.88 | 5.1e-07 | Click! |
cdx1a | dr11_v1_chr14_+_3287740_3287740 | -0.75 | 2.1e-04 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr11_+_25257022 Show fit | 2.22 |
ENSDART00000156052
|
tumor protein p53 inducible nuclear protein 2 |
|
chr20_-_29499363 Show fit | 2.18 |
ENSDART00000152889
ENSDART00000153252 ENSDART00000170972 ENSDART00000166420 ENSDART00000163079 |
ribonucleotide reductase M2 polypeptide |
|
chr19_-_47571456 Show fit | 2.16 |
ENSDART00000158071
ENSDART00000165841 |
ribonucleotide reductase M2 polypeptide |
|
chr3_-_15999501 Show fit | 2.13 |
ENSDART00000160668
|
NME/NM23 nucleoside diphosphate kinase 3 |
|
chr7_-_17028015 Show fit | 2.10 |
ENSDART00000022441
|
developing brain homeobox 1a |
|
chr12_-_13205854 Show fit | 1.94 |
ENSDART00000077829
|
pelota mRNA surveillance and ribosome rescue factor |
|
chr19_+_1872794 Show fit | 1.92 |
ENSDART00000013217
|
small nuclear ribonucleoprotein D1 polypeptide |
|
chr8_-_32803227 Show fit | 1.90 |
ENSDART00000110079
|
zgc:194839 |
|
chr11_-_25257045 Show fit | 1.89 |
ENSDART00000130477
|
snail family zinc finger 1a |
|
chr25_-_29074064 Show fit | 1.85 |
ENSDART00000165603
|
AT rich interactive domain 3B (BRIGHT-like) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 4.3 | GO:0009263 | deoxyribonucleotide biosynthetic process(GO:0009263) |
0.2 | 3.7 | GO:0008078 | mesodermal cell migration(GO:0008078) |
0.1 | 3.7 | GO:0000387 | spliceosomal snRNP assembly(GO:0000387) |
0.0 | 3.0 | GO:0043484 | regulation of RNA splicing(GO:0043484) |
0.0 | 2.8 | GO:0008380 | RNA splicing(GO:0008380) |
0.2 | 2.6 | GO:0016199 | axon midline choice point recognition(GO:0016199) |
0.2 | 2.2 | GO:0016578 | histone deubiquitination(GO:0016578) |
0.1 | 2.2 | GO:0010508 | positive regulation of autophagy(GO:0010508) |
0.4 | 2.1 | GO:0097065 | anterior head development(GO:0097065) |
0.2 | 2.1 | GO:0098869 | response to superoxide(GO:0000303) response to oxygen radical(GO:0000305) removal of superoxide radicals(GO:0019430) cellular response to oxygen radical(GO:0071450) cellular response to superoxide(GO:0071451) cellular oxidant detoxification(GO:0098869) cellular detoxification(GO:1990748) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 3.7 | GO:0034715 | pICln-Sm protein complex(GO:0034715) |
0.1 | 3.0 | GO:0016592 | mediator complex(GO:0016592) |
0.0 | 2.7 | GO:0005938 | cell cortex(GO:0005938) |
0.1 | 2.5 | GO:0016605 | PML body(GO:0016605) |
0.0 | 2.2 | GO:0005581 | collagen trimer(GO:0005581) |
0.0 | 2.1 | GO:0005681 | spliceosomal complex(GO:0005681) |
0.1 | 1.9 | GO:0000940 | condensed chromosome outer kinetochore(GO:0000940) |
0.6 | 1.8 | GO:1990072 | TRAPPIII protein complex(GO:1990072) |
0.3 | 1.6 | GO:0070390 | transcription export complex 2(GO:0070390) |
0.3 | 1.6 | GO:0018444 | translation release factor complex(GO:0018444) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.6 | 4.3 | GO:0061731 | ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor(GO:0004748) oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor(GO:0016728) ribonucleoside-diphosphate reductase activity(GO:0061731) |
0.9 | 3.7 | GO:0051059 | NF-kappaB binding(GO:0051059) |
0.0 | 3.2 | GO:0003712 | transcription factor activity, transcription factor binding(GO:0000989) transcription cofactor activity(GO:0003712) |
0.1 | 2.6 | GO:0098632 | protein binding involved in cell-cell adhesion(GO:0098632) |
0.0 | 2.6 | GO:0003713 | transcription coactivator activity(GO:0003713) |
0.1 | 2.5 | GO:0005109 | frizzled binding(GO:0005109) |
0.3 | 2.1 | GO:0008379 | thioredoxin peroxidase activity(GO:0008379) |
0.1 | 2.1 | GO:0004550 | nucleoside diphosphate kinase activity(GO:0004550) |
0.0 | 1.9 | GO:0005200 | structural constituent of cytoskeleton(GO:0005200) |
0.0 | 1.9 | GO:0004519 | endonuclease activity(GO:0004519) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 4.3 | PID E2F PATHWAY | E2F transcription factor network |
0.0 | 2.1 | ST B CELL ANTIGEN RECEPTOR | B Cell Antigen Receptor |
0.1 | 1.6 | PID SYNDECAN 3 PATHWAY | Syndecan-3-mediated signaling events |
0.0 | 1.1 | PID DNA PK PATHWAY | DNA-PK pathway in nonhomologous end joining |
0.0 | 0.9 | WNT SIGNALING | Genes related to Wnt-mediated signal transduction |
0.0 | 0.3 | PID INTEGRIN5 PATHWAY | Beta5 beta6 beta7 and beta8 integrin cell surface interactions |
0.0 | 0.2 | PID HIV NEF PATHWAY | HIV-1 Nef: Negative effector of Fas and TNF-alpha |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 4.3 | REACTOME SYNTHESIS AND INTERCONVERSION OF NUCLEOTIDE DI AND TRIPHOSPHATES | Genes involved in Synthesis and interconversion of nucleotide di- and triphosphates |
0.1 | 3.7 | REACTOME MRNA SPLICING MINOR PATHWAY | Genes involved in mRNA Splicing - Minor Pathway |
0.1 | 2.6 | REACTOME SIGNALING BY ROBO RECEPTOR | Genes involved in Signaling by Robo receptor |
0.2 | 1.9 | REACTOME SLBP DEPENDENT PROCESSING OF REPLICATION DEPENDENT HISTONE PRE MRNAS | Genes involved in SLBP Dependent Processing of Replication-Dependent Histone Pre-mRNAs |
0.2 | 1.6 | REACTOME SIGNALING BY NOTCH4 | Genes involved in Signaling by NOTCH4 |
0.0 | 1.5 | REACTOME ASSOCIATION OF TRIC CCT WITH TARGET PROTEINS DURING BIOSYNTHESIS | Genes involved in Association of TriC/CCT with target proteins during biosynthesis |
0.0 | 1.3 | REACTOME LYSOSOME VESICLE BIOGENESIS | Genes involved in Lysosome Vesicle Biogenesis |
0.1 | 1.2 | REACTOME METABOLISM OF POLYAMINES | Genes involved in Metabolism of polyamines |
0.1 | 1.2 | REACTOME DEPOSITION OF NEW CENPA CONTAINING NUCLEOSOMES AT THE CENTROMERE | Genes involved in Deposition of New CENPA-containing Nucleosomes at the Centromere |
0.0 | 1.2 | REACTOME TRANSCRIPTIONAL REGULATION OF WHITE ADIPOCYTE DIFFERENTIATION | Genes involved in Transcriptional Regulation of White Adipocyte Differentiation |