PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
cebpa | dr11_v1_chr7_-_38087865_38087865 | -0.17 | 5.0e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr19_+_8606883 Show fit | 1.81 |
ENSDART00000054469
ENSDART00000185264 |
S100 calcium binding protein A10a |
|
chr25_+_31222069 Show fit | 1.35 |
ENSDART00000159373
|
troponin I type 2a (skeletal, fast), tandem duplicate 1 |
|
chr6_-_43449013 Show fit | 1.24 |
ENSDART00000122423
|
2-epi-5-epi-valiolone synthase |
|
chr2_-_51794472 Show fit | 1.14 |
ENSDART00000186652
|
|
|
chr5_+_45677781 Show fit | 1.05 |
ENSDART00000163120
ENSDART00000126537 |
group-specific component (vitamin D binding protein) |
|
chr6_-_345503 Show fit | 0.99 |
ENSDART00000168901
|
phosphodiesterase 6H, cGMP-specific, cone, gamma, paralog a |
|
chr1_+_9954489 Show fit | 0.86 |
ENSDART00000005895
ENSDART00000183003 |
protein disulfide isomerase family A, member 2 |
|
chr6_+_41186320 Show fit | 0.80 |
ENSDART00000025241
|
opsin 1 (cone pigments), medium-wave-sensitive, 2 |
|
chr7_+_19903924 Show fit | 0.79 |
ENSDART00000159112
|
si:ch211-285j22.3 |
|
chr16_+_50289916 Show fit | 0.79 |
ENSDART00000168861
ENSDART00000167332 |
hepcidin antimicrobial peptide |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.3 | GO:0003009 | skeletal muscle contraction(GO:0003009) |
0.2 | 1.0 | GO:0045745 | positive regulation of G-protein coupled receptor protein signaling pathway(GO:0045745) |
0.0 | 1.0 | GO:0051180 | vitamin transport(GO:0051180) |
0.0 | 1.0 | GO:0051085 | chaperone mediated protein folding requiring cofactor(GO:0051085) |
0.0 | 1.0 | GO:0010906 | regulation of glucose metabolic process(GO:0010906) |
0.0 | 0.9 | GO:0042574 | retinal metabolic process(GO:0042574) |
0.0 | 0.9 | GO:0043297 | apical junction assembly(GO:0043297) bicellular tight junction assembly(GO:0070830) |
0.1 | 0.8 | GO:0032570 | response to progesterone(GO:0032570) |
0.0 | 0.8 | GO:0030388 | fructose 1,6-bisphosphate metabolic process(GO:0030388) |
0.0 | 0.8 | GO:0032402 | melanosome transport(GO:0032402) pigment granule transport(GO:0051904) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.3 | GO:0005861 | troponin complex(GO:0005861) |
0.1 | 1.0 | GO:0042622 | photoreceptor outer segment membrane(GO:0042622) |
0.0 | 1.0 | GO:0005788 | endoplasmic reticulum lumen(GO:0005788) |
0.0 | 0.8 | GO:0001750 | photoreceptor outer segment(GO:0001750) |
0.0 | 0.7 | GO:0046930 | pore complex(GO:0046930) |
0.1 | 0.6 | GO:0045275 | mitochondrial respiratory chain complex III(GO:0005750) respiratory chain complex III(GO:0045275) |
0.0 | 0.6 | GO:0031304 | intrinsic component of mitochondrial inner membrane(GO:0031304) |
0.1 | 0.5 | GO:0071914 | prominosome(GO:0071914) |
0.1 | 0.5 | GO:0005952 | cAMP-dependent protein kinase complex(GO:0005952) |
0.0 | 0.5 | GO:0060170 | ciliary membrane(GO:0060170) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.8 | GO:0048306 | calcium-dependent protein binding(GO:0048306) |
0.0 | 1.3 | GO:0004866 | endopeptidase inhibitor activity(GO:0004866) |
0.1 | 1.2 | GO:0016838 | carbon-oxygen lyase activity, acting on phosphates(GO:0016838) |
0.3 | 1.0 | GO:0005499 | vitamin D binding(GO:0005499) |
0.3 | 1.0 | GO:0005153 | interleukin-8 receptor binding(GO:0005153) |
0.1 | 1.0 | GO:0004740 | pyruvate dehydrogenase (acetyl-transferring) kinase activity(GO:0004740) |
0.1 | 1.0 | GO:0047555 | 3',5'-cyclic-GMP phosphodiesterase activity(GO:0047555) |
0.1 | 0.9 | GO:0016864 | protein disulfide isomerase activity(GO:0003756) intramolecular oxidoreductase activity, transposing S-S bonds(GO:0016864) |
0.2 | 0.8 | GO:0070891 | lipoteichoic acid binding(GO:0070891) |
0.1 | 0.8 | GO:0004332 | fructose-bisphosphate aldolase activity(GO:0004332) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.7 | PID ERA GENOMIC PATHWAY | Validated nuclear estrogen receptor alpha network |
0.0 | 0.5 | PID INTEGRIN A4B1 PATHWAY | Alpha4 beta1 integrin signaling events |
0.0 | 0.5 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
0.0 | 0.4 | PID INTEGRIN2 PATHWAY | Beta2 integrin cell surface interactions |
0.0 | 0.4 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
0.0 | 0.1 | PID TOLL ENDOGENOUS PATHWAY | Endogenous TLR signaling |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.1 | REACTOME STEROID HORMONES | Genes involved in Steroid hormones |
0.1 | 0.8 | REACTOME OPSINS | Genes involved in Opsins |
0.1 | 0.8 | REACTOME INTRINSIC PATHWAY | Genes involved in Intrinsic Pathway |
0.0 | 0.8 | REACTOME GLYCOLYSIS | Genes involved in Glycolysis |
0.0 | 0.7 | REACTOME RESPIRATORY ELECTRON TRANSPORT | Genes involved in Respiratory electron transport |
0.0 | 0.5 | REACTOME DARPP 32 EVENTS | Genes involved in DARPP-32 events |
0.0 | 0.4 | REACTOME REGULATION OF BETA CELL DEVELOPMENT | Genes involved in Regulation of beta-cell development |
0.0 | 0.3 | REACTOME FACILITATIVE NA INDEPENDENT GLUCOSE TRANSPORTERS | Genes involved in Facilitative Na+-independent glucose transporters |
0.0 | 0.3 | REACTOME PYRIMIDINE CATABOLISM | Genes involved in Pyrimidine catabolism |
0.0 | 0.3 | REACTOME CHYLOMICRON MEDIATED LIPID TRANSPORT | Genes involved in Chylomicron-mediated lipid transport |