PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
cebpb | dr11_v1_chr8_-_28449782_28449782 | -0.77 | 1.1e-04 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr19_+_8606883 Show fit | 12.68 |
ENSDART00000054469
ENSDART00000185264 |
S100 calcium binding protein A10a |
|
chr5_+_51079504 Show fit | 10.84 |
ENSDART00000097466
|
family with sequence similarity 169, member Aa |
|
chr6_-_345503 Show fit | 10.70 |
ENSDART00000168901
|
phosphodiesterase 6H, cGMP-specific, cone, gamma, paralog a |
|
chr5_-_33259079 Show fit | 9.93 |
ENSDART00000132223
|
interferon induced transmembrane protein 1 |
|
chr7_+_65240227 Show fit | 8.46 |
ENSDART00000168287
|
beta-carotene oxygenase 1, like |
|
chr25_+_31222069 Show fit | 8.37 |
ENSDART00000159373
|
troponin I type 2a (skeletal, fast), tandem duplicate 1 |
|
chr2_-_32643738 Show fit | 8.02 |
ENSDART00000112452
|
si:dkeyp-73d8.9 |
|
chr6_-_43449013 Show fit | 7.77 |
ENSDART00000122423
|
2-epi-5-epi-valiolone synthase |
|
chr12_+_46960579 Show fit | 7.75 |
ENSDART00000149032
|
ornithine aminotransferase |
|
chr20_-_40755614 Show fit | 6.92 |
ENSDART00000061247
|
connexin 32.3 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.8 | 10.7 | GO:0045745 | positive regulation of G-protein coupled receptor protein signaling pathway(GO:0045745) |
0.9 | 8.5 | GO:0046247 | carotene metabolic process(GO:0016119) carotene catabolic process(GO:0016121) terpene metabolic process(GO:0042214) terpene catabolic process(GO:0046247) |
0.2 | 8.4 | GO:0003009 | skeletal muscle contraction(GO:0003009) |
0.9 | 8.2 | GO:0055129 | proline biosynthetic process(GO:0006561) L-proline biosynthetic process(GO:0055129) |
0.2 | 8.2 | GO:0019432 | triglyceride biosynthetic process(GO:0019432) |
0.5 | 6.7 | GO:0015721 | bile acid and bile salt transport(GO:0015721) |
1.1 | 6.3 | GO:0002523 | leukocyte migration involved in inflammatory response(GO:0002523) |
1.2 | 6.1 | GO:0046677 | response to antibiotic(GO:0046677) |
0.6 | 5.8 | GO:0042574 | retinal metabolic process(GO:0042574) |
0.7 | 5.5 | GO:0033539 | fatty acid beta-oxidation using acyl-CoA dehydrogenase(GO:0033539) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 27.5 | GO:0005615 | extracellular space(GO:0005615) |
0.0 | 13.6 | GO:0045202 | synapse(GO:0045202) |
0.0 | 13.5 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
1.5 | 10.7 | GO:0042622 | photoreceptor outer segment membrane(GO:0042622) |
0.1 | 9.9 | GO:0005741 | mitochondrial outer membrane(GO:0005741) |
0.2 | 8.4 | GO:0005861 | troponin complex(GO:0005861) |
0.2 | 7.7 | GO:0030864 | cortical actin cytoskeleton(GO:0030864) |
1.9 | 5.8 | GO:0044316 | cone cell pedicle(GO:0044316) |
0.4 | 5.1 | GO:0033162 | melanosome membrane(GO:0033162) chitosome(GO:0045009) |
0.2 | 4.7 | GO:0005605 | basal lamina(GO:0005605) laminin complex(GO:0043256) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 12.7 | GO:0048306 | calcium-dependent protein binding(GO:0048306) |
2.7 | 10.7 | GO:0005153 | interleukin-8 receptor binding(GO:0005153) |
0.8 | 10.7 | GO:0047555 | 3',5'-cyclic-GMP phosphodiesterase activity(GO:0047555) |
0.0 | 9.7 | GO:0004725 | protein tyrosine phosphatase activity(GO:0004725) |
2.3 | 9.1 | GO:0030228 | lipoprotein particle receptor activity(GO:0030228) |
0.9 | 8.5 | GO:0003834 | beta-carotene 15,15'-monooxygenase activity(GO:0003834) carotenoid dioxygenase activity(GO:0010436) |
0.1 | 8.4 | GO:0015020 | glucuronosyltransferase activity(GO:0015020) |
0.1 | 8.3 | GO:0015293 | symporter activity(GO:0015293) |
0.9 | 7.8 | GO:0016838 | carbon-oxygen lyase activity, acting on phosphates(GO:0016838) |
0.3 | 7.8 | GO:0008483 | transaminase activity(GO:0008483) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 6.5 | PID NETRIN PATHWAY | Netrin-mediated signaling events |
0.2 | 5.5 | PID CERAMIDE PATHWAY | Ceramide signaling pathway |
0.1 | 4.3 | PID TAP63 PATHWAY | Validated transcriptional targets of TAp63 isoforms |
0.2 | 4.0 | PID REELIN PATHWAY | Reelin signaling pathway |
0.1 | 3.8 | PID FOXO PATHWAY | FoxO family signaling |
0.2 | 3.1 | ST MYOCYTE AD PATHWAY | Myocyte Adrenergic Pathway is a specific case of the generalized Adrenergic Pathway. |
0.1 | 3.1 | PID RXR VDR PATHWAY | RXR and RAR heterodimerization with other nuclear receptor |
0.0 | 3.1 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
0.1 | 2.9 | NABA PROTEOGLYCANS | Genes encoding proteoglycans |
0.1 | 2.6 | PID MAPK TRK PATHWAY | Trk receptor signaling mediated by the MAPK pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.2 | 12.0 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |
0.6 | 10.0 | REACTOME IMMUNOREGULATORY INTERACTIONS BETWEEN A LYMPHOID AND A NON LYMPHOID CELL | Genes involved in Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cell |
0.8 | 6.7 | REACTOME TRANSPORT OF ORGANIC ANIONS | Genes involved in Transport of organic anions |
0.0 | 4.8 | REACTOME NONSENSE MEDIATED DECAY ENHANCED BY THE EXON JUNCTION COMPLEX | Genes involved in Nonsense Mediated Decay Enhanced by the Exon Junction Complex |
0.3 | 4.5 | REACTOME SYNTHESIS OF PE | Genes involved in Synthesis of PE |
0.1 | 4.4 | REACTOME ION TRANSPORT BY P TYPE ATPASES | Genes involved in Ion transport by P-type ATPases |
1.2 | 3.6 | REACTOME UNBLOCKING OF NMDA RECEPTOR GLUTAMATE BINDING AND ACTIVATION | Genes involved in Unblocking of NMDA receptor, glutamate binding and activation |
0.4 | 3.2 | REACTOME PYRIMIDINE CATABOLISM | Genes involved in Pyrimidine catabolism |
0.2 | 3.2 | REACTOME NA CL DEPENDENT NEUROTRANSMITTER TRANSPORTERS | Genes involved in Na+/Cl- dependent neurotransmitter transporters |
0.2 | 3.1 | REACTOME INHIBITION OF VOLTAGE GATED CA2 CHANNELS VIA GBETA GAMMA SUBUNITS | Genes involved in Inhibition of voltage gated Ca2+ channels via Gbeta/gamma subunits |