PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
cebpd | dr11_v1_chr24_+_35564668_35564668 | 0.69 | 1.0e-03 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr19_+_8606883 Show fit | 7.23 |
ENSDART00000054469
ENSDART00000185264 |
S100 calcium binding protein A10a |
|
chr11_-_29996344 Show fit | 6.82 |
ENSDART00000003712
ENSDART00000126110 |
angiotensin I converting enzyme 2 |
|
chr6_-_345503 Show fit | 6.40 |
ENSDART00000168901
|
phosphodiesterase 6H, cGMP-specific, cone, gamma, paralog a |
|
chr5_+_51079504 Show fit | 5.84 |
ENSDART00000097466
|
family with sequence similarity 169, member Aa |
|
chr21_+_11969603 Show fit | 4.83 |
ENSDART00000142247
ENSDART00000140652 |
motilin-like |
|
chr20_-_40755614 Show fit | 4.64 |
ENSDART00000061247
|
connexin 32.3 |
|
chr3_-_31079186 Show fit | 4.59 |
ENSDART00000145636
ENSDART00000140569 |
elongin B elongin B |
|
chr8_-_39739627 Show fit | 4.58 |
ENSDART00000135422
ENSDART00000067844 |
si:ch211-170d8.5 |
|
chr2_-_51772438 Show fit | 4.30 |
ENSDART00000170241
|
Danio rerio three-finger protein 5 (LOC100003647), mRNA. |
|
chr7_+_4162994 Show fit | 4.13 |
ENSDART00000172800
|
si:ch211-63p21.1 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.1 | 6.4 | GO:0045745 | positive regulation of G-protein coupled receptor protein signaling pathway(GO:0045745) |
0.1 | 6.1 | GO:0019722 | calcium-mediated signaling(GO:0019722) |
0.2 | 5.8 | GO:0007157 | heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules(GO:0007157) |
0.1 | 4.6 | GO:0006368 | transcription elongation from RNA polymerase II promoter(GO:0006368) |
0.5 | 4.0 | GO:0033539 | fatty acid beta-oxidation using acyl-CoA dehydrogenase(GO:0033539) |
0.6 | 3.9 | GO:0002523 | leukocyte migration involved in inflammatory response(GO:0002523) |
0.4 | 3.9 | GO:0006561 | proline biosynthetic process(GO:0006561) L-proline biosynthetic process(GO:0055129) |
0.1 | 3.8 | GO:0017144 | drug metabolic process(GO:0017144) drug catabolic process(GO:0042737) exogenous drug catabolic process(GO:0042738) |
0.4 | 3.5 | GO:0046247 | carotene metabolic process(GO:0016119) carotene catabolic process(GO:0016121) terpene metabolic process(GO:0042214) terpene catabolic process(GO:0046247) |
0.2 | 3.4 | GO:0015721 | bile acid and bile salt transport(GO:0015721) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 23.5 | GO:0005576 | extracellular region(GO:0005576) |
0.9 | 6.4 | GO:0042622 | photoreceptor outer segment membrane(GO:0042622) |
0.0 | 5.8 | GO:0005912 | adherens junction(GO:0005912) |
0.0 | 3.5 | GO:0016324 | apical plasma membrane(GO:0016324) |
0.4 | 3.2 | GO:0030428 | cell septum(GO:0030428) |
0.5 | 2.9 | GO:0030891 | VCB complex(GO:0030891) |
0.0 | 2.8 | GO:0005891 | voltage-gated calcium channel complex(GO:0005891) |
0.0 | 2.8 | GO:0010008 | endosome membrane(GO:0010008) |
0.7 | 2.7 | GO:0070044 | synaptobrevin 2-SNAP-25-syntaxin-1a complex(GO:0070044) |
0.0 | 2.7 | GO:0005882 | intermediate filament(GO:0005882) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 7.2 | GO:0048306 | calcium-dependent protein binding(GO:0048306) |
0.2 | 6.8 | GO:0004180 | carboxypeptidase activity(GO:0004180) |
1.6 | 6.4 | GO:0005153 | interleukin-8 receptor binding(GO:0005153) |
0.5 | 6.4 | GO:0047555 | 3',5'-cyclic-GMP phosphodiesterase activity(GO:0047555) |
0.1 | 4.9 | GO:0005245 | voltage-gated calcium channel activity(GO:0005245) |
1.0 | 4.0 | GO:0004361 | glutaryl-CoA dehydrogenase activity(GO:0004361) |
0.2 | 3.9 | GO:0008483 | transaminase activity(GO:0008483) |
0.6 | 3.8 | GO:0005483 | soluble NSF attachment protein activity(GO:0005483) |
0.1 | 3.8 | GO:0016712 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen(GO:0016712) |
0.4 | 3.5 | GO:0010436 | beta-carotene 15,15'-monooxygenase activity(GO:0003834) carotenoid dioxygenase activity(GO:0010436) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.9 | NABA SECRETED FACTORS | Genes encoding secreted soluble factors |
0.1 | 2.0 | PID MAPK TRK PATHWAY | Trk receptor signaling mediated by the MAPK pathway |
0.1 | 1.5 | ST WNT CA2 CYCLIC GMP PATHWAY | Wnt/Ca2+/cyclic GMP signaling. |
0.0 | 1.3 | PID LYSOPHOSPHOLIPID PATHWAY | LPA receptor mediated events |
0.0 | 1.1 | PID AR TF PATHWAY | Regulation of Androgen receptor activity |
0.0 | 0.9 | NABA PROTEOGLYCANS | Genes encoding proteoglycans |
0.1 | 0.6 | SA MMP CYTOKINE CONNECTION | Cytokines can induce activation of matrix metalloproteinases, which degrade extracellular matrix. |
0.0 | 0.5 | PID P38 ALPHA BETA PATHWAY | Regulation of p38-alpha and p38-beta |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.6 | 5.7 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |
0.4 | 3.4 | REACTOME TRANSPORT OF ORGANIC ANIONS | Genes involved in Transport of organic anions |
0.3 | 2.6 | REACTOME PYRIMIDINE CATABOLISM | Genes involved in Pyrimidine catabolism |
0.1 | 2.2 | REACTOME SPHINGOLIPID DE NOVO BIOSYNTHESIS | Genes involved in Sphingolipid de novo biosynthesis |
0.5 | 1.5 | REACTOME CREB PHOSPHORYLATION THROUGH THE ACTIVATION OF CAMKII | Genes involved in CREB phosphorylation through the activation of CaMKII |
0.0 | 1.2 | REACTOME RESPIRATORY ELECTRON TRANSPORT | Genes involved in Respiratory electron transport |
0.0 | 1.1 | REACTOME TRANSPORT OF INORGANIC CATIONS ANIONS AND AMINO ACIDS OLIGOPEPTIDES | Genes involved in Transport of inorganic cations/anions and amino acids/oligopeptides |
0.1 | 0.6 | REACTOME EXTRINSIC PATHWAY FOR APOPTOSIS | Genes involved in Extrinsic Pathway for Apoptosis |
0.0 | 0.6 | REACTOME METABOLISM OF VITAMINS AND COFACTORS | Genes involved in Metabolism of vitamins and cofactors |
0.0 | 0.5 | REACTOME KINESINS | Genes involved in Kinesins |