PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
cebpg | dr11_v1_chr7_+_38089650_38089650 | 0.78 | 7.0e-05 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr9_+_32301456 Show fit | 1.09 |
ENSDART00000078608
ENSDART00000185153 ENSDART00000144947 |
heat shock 10 protein 1 |
|
chr18_-_40905901 Show fit | 1.08 |
ENSDART00000064848
|
peptidoglycan recognition protein 5 |
|
chr3_+_23703704 Show fit | 1.00 |
ENSDART00000024256
|
homeobox B6a |
|
chr1_-_28885919 Show fit | 0.92 |
ENSDART00000152182
|
protein O-glucosyltransferase 1 |
|
chr19_+_16016038 Show fit | 0.89 |
ENSDART00000131319
|
CTP synthase 1a |
|
chr19_-_25113660 Show fit | 0.89 |
ENSDART00000035538
|
protein tyrosine phosphatase type IVA, member 3 |
|
chr22_-_23668356 Show fit | 0.89 |
ENSDART00000167106
ENSDART00000159622 ENSDART00000163228 |
complement factor H |
|
chr9_-_32300783 Show fit | 0.82 |
ENSDART00000078596
|
heat shock 60 protein 1 |
|
chr9_-_32300611 Show fit | 0.81 |
ENSDART00000127938
|
heat shock 60 protein 1 |
|
chr9_+_426392 Show fit | 0.79 |
ENSDART00000172515
|
basic leucine zipper and W2 domains 1b |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.6 | 2.4 | GO:0045041 | protein import into mitochondrial intermembrane space(GO:0045041) |
0.1 | 1.8 | GO:0051084 | 'de novo' protein folding(GO:0006458) 'de novo' posttranslational protein folding(GO:0051084) |
0.1 | 1.4 | GO:0045454 | cell redox homeostasis(GO:0045454) |
0.1 | 1.3 | GO:0033387 | putrescine biosynthetic process from ornithine(GO:0033387) |
0.3 | 1.2 | GO:0044210 | 'de novo' CTP biosynthetic process(GO:0044210) |
0.0 | 1.2 | GO:0006890 | retrograde vesicle-mediated transport, Golgi to ER(GO:0006890) |
0.2 | 1.1 | GO:0000270 | peptidoglycan metabolic process(GO:0000270) peptidoglycan catabolic process(GO:0009253) |
0.1 | 0.9 | GO:0045747 | positive regulation of Notch signaling pathway(GO:0045747) |
0.0 | 0.9 | GO:0042159 | lipoprotein catabolic process(GO:0042159) |
0.0 | 0.9 | GO:0090090 | negative regulation of canonical Wnt signaling pathway(GO:0090090) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 3.7 | GO:0005759 | mitochondrial matrix(GO:0005759) |
0.3 | 1.2 | GO:0097268 | cytoophidium(GO:0097268) |
0.0 | 1.2 | GO:0033116 | endoplasmic reticulum-Golgi intermediate compartment membrane(GO:0033116) |
0.0 | 1.1 | GO:0005793 | endoplasmic reticulum-Golgi intermediate compartment(GO:0005793) |
0.0 | 0.8 | GO:0031970 | mitochondrial intermembrane space(GO:0005758) organelle envelope lumen(GO:0031970) |
0.0 | 0.7 | GO:0016282 | eukaryotic 43S preinitiation complex(GO:0016282) |
0.2 | 0.6 | GO:0005577 | fibrinogen complex(GO:0005577) |
0.1 | 0.6 | GO:0005787 | signal peptidase complex(GO:0005787) |
0.1 | 0.6 | GO:0034098 | VCP-NPL4-UFD1 AAA ATPase complex(GO:0034098) |
0.1 | 0.6 | GO:0001772 | immunological synapse(GO:0001772) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 3.4 | GO:0051087 | chaperone binding(GO:0051087) |
0.1 | 1.3 | GO:0004586 | ornithine decarboxylase activity(GO:0004586) |
0.3 | 1.2 | GO:0003883 | CTP synthase activity(GO:0003883) |
0.3 | 1.1 | GO:0008745 | N-acetylmuramoyl-L-alanine amidase activity(GO:0008745) |
0.1 | 1.0 | GO:0048019 | receptor antagonist activity(GO:0048019) |
0.1 | 0.9 | GO:0035252 | UDP-xylosyltransferase activity(GO:0035252) |
0.1 | 0.8 | GO:0052650 | NADP-retinol dehydrogenase activity(GO:0052650) |
0.0 | 0.8 | GO:0015035 | protein disulfide oxidoreductase activity(GO:0015035) |
0.1 | 0.7 | GO:0000064 | L-ornithine transmembrane transporter activity(GO:0000064) |
0.1 | 0.7 | GO:0004526 | ribonuclease P activity(GO:0004526) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.1 | PID TOLL ENDOGENOUS PATHWAY | Endogenous TLR signaling |
0.0 | 1.4 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
0.0 | 0.9 | PID PRL SIGNALING EVENTS PATHWAY | Signaling events mediated by PRL |
0.0 | 0.6 | PID ERB GENOMIC PATHWAY | Validated nuclear estrogen receptor beta network |
0.0 | 0.6 | PID INTEGRIN2 PATHWAY | Beta2 integrin cell surface interactions |
0.0 | 0.6 | PID REELIN PATHWAY | Reelin signaling pathway |
0.0 | 0.3 | ST GA12 PATHWAY | G alpha 12 Pathway |
0.0 | 0.2 | PID MYC PATHWAY | C-MYC pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.6 | REACTOME MITOCHONDRIAL PROTEIN IMPORT | Genes involved in Mitochondrial Protein Import |
0.0 | 1.3 | REACTOME REGULATION OF ORNITHINE DECARBOXYLASE ODC | Genes involved in Regulation of ornithine decarboxylase (ODC) |
0.2 | 0.9 | REACTOME REGULATION OF COMPLEMENT CASCADE | Genes involved in Regulation of Complement cascade |
0.0 | 0.8 | REACTOME CELL JUNCTION ORGANIZATION | Genes involved in Cell junction organization |
0.1 | 0.6 | REACTOME CHYLOMICRON MEDIATED LIPID TRANSPORT | Genes involved in Chylomicron-mediated lipid transport |
0.1 | 0.6 | REACTOME SYNTHESIS SECRETION AND INACTIVATION OF GLP1 | Genes involved in Synthesis, Secretion, and Inactivation of Glucagon-like Peptide-1 (GLP-1) |
0.1 | 0.6 | REACTOME COMMON PATHWAY | Genes involved in Common Pathway |
0.0 | 0.6 | REACTOME SYNTHESIS AND INTERCONVERSION OF NUCLEOTIDE DI AND TRIPHOSPHATES | Genes involved in Synthesis and interconversion of nucleotide di- and triphosphates |
0.1 | 0.5 | REACTOME IKK COMPLEX RECRUITMENT MEDIATED BY RIP1 | Genes involved in IKK complex recruitment mediated by RIP1 |
0.0 | 0.5 | REACTOME A TETRASACCHARIDE LINKER SEQUENCE IS REQUIRED FOR GAG SYNTHESIS | Genes involved in A tetrasaccharide linker sequence is required for GAG synthesis |