PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
clocka | dr11_v1_chr20_+_22130284_22130284 | -0.57 | 1.2e-02 | Click! |
clockb | dr11_v1_chr1_+_19433004_19433004 | -0.44 | 5.9e-02 | Click! |
npas2 | dr11_v1_chr5_+_22791686_22791686 | -0.35 | 1.5e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr10_+_22034477 Show fit | 8.82 |
ENSDART00000133304
ENSDART00000134189 ENSDART00000021240 ENSDART00000100526 |
nucleophosmin 1a |
|
chr3_+_53773256 Show fit | 5.30 |
ENSDART00000170461
|
collagen, type V, alpha 3a |
|
chr23_+_25292147 Show fit | 5.01 |
ENSDART00000131486
|
proliferation-associated 2G4, b |
|
chr8_+_26059677 Show fit | 4.71 |
ENSDART00000009178
|
IMP (inosine 5'-monophosphate) dehydrogenase 2 |
|
chr9_-_11587070 Show fit | 4.69 |
ENSDART00000030995
|
uridine monophosphate synthetase |
|
chr19_+_16016038 Show fit | 4.54 |
ENSDART00000131319
|
CTP synthase 1a |
|
chr16_-_34195002 Show fit | 4.49 |
ENSDART00000054026
|
regulator of chromosome condensation 1 |
|
chr13_+_13930263 Show fit | 4.49 |
ENSDART00000079154
|
ribose 5-phosphate isomerase A (ribose 5-phosphate epimerase) |
|
chr7_+_29163762 Show fit | 4.21 |
ENSDART00000173762
|
solute carrier family 38, member 8b |
|
chr13_+_15701849 Show fit | 4.19 |
ENSDART00000003517
|
tRNA methyltransferase 61A |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 21.8 | GO:0006364 | rRNA processing(GO:0006364) |
1.4 | 13.7 | GO:0006189 | 'de novo' IMP biosynthetic process(GO:0006189) |
0.4 | 13.7 | GO:0006270 | DNA replication initiation(GO:0006270) |
0.0 | 12.6 | GO:0006396 | RNA processing(GO:0006396) |
0.1 | 12.3 | GO:0042254 | ribosome biogenesis(GO:0042254) |
1.2 | 10.9 | GO:0000056 | ribosomal small subunit export from nucleus(GO:0000056) |
0.3 | 10.5 | GO:0000462 | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)(GO:0000462) |
0.3 | 10.5 | GO:0030488 | tRNA methylation(GO:0030488) |
1.5 | 10.4 | GO:0045901 | positive regulation of translational elongation(GO:0045901) positive regulation of translational termination(GO:0045905) |
2.7 | 8.2 | GO:0031120 | snRNA pseudouridine synthesis(GO:0031120) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 49.3 | GO:0005730 | nucleolus(GO:0005730) |
0.0 | 13.5 | GO:0005829 | cytosol(GO:0005829) |
0.2 | 12.0 | GO:0005643 | nuclear pore(GO:0005643) |
0.7 | 9.0 | GO:0000808 | origin recognition complex(GO:0000808) nuclear origin of replication recognition complex(GO:0005664) |
2.0 | 8.2 | GO:0072588 | box H/ACA snoRNP complex(GO:0031429) box H/ACA RNP complex(GO:0072588) |
1.9 | 7.5 | GO:0097268 | cytoophidium(GO:0097268) |
0.4 | 7.5 | GO:0030686 | 90S preribosome(GO:0030686) |
1.3 | 6.7 | GO:0031515 | tRNA (m1A) methyltransferase complex(GO:0031515) |
0.1 | 6.0 | GO:0000315 | organellar large ribosomal subunit(GO:0000315) mitochondrial large ribosomal subunit(GO:0005762) |
0.4 | 5.7 | GO:0005666 | DNA-directed RNA polymerase III complex(GO:0005666) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 16.8 | GO:0003723 | RNA binding(GO:0003723) |
0.2 | 13.3 | GO:0003724 | RNA helicase activity(GO:0003724) |
0.1 | 13.2 | GO:0042393 | histone binding(GO:0042393) |
0.3 | 12.3 | GO:0043022 | ribosome binding(GO:0043022) |
0.0 | 10.2 | GO:0005525 | GTP binding(GO:0005525) |
1.4 | 9.7 | GO:0016426 | tRNA (adenine) methyltransferase activity(GO:0016426) |
2.3 | 9.2 | GO:0004639 | phosphoribosylaminoimidazolesuccinocarboxamide synthase activity(GO:0004639) |
0.0 | 9.1 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
0.1 | 8.8 | GO:0015171 | amino acid transmembrane transporter activity(GO:0015171) |
1.9 | 7.5 | GO:0003883 | CTP synthase activity(GO:0003883) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 10.2 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
0.0 | 3.7 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
0.0 | 2.8 | PID TELOMERASE PATHWAY | Regulation of Telomerase |
0.2 | 2.7 | PID SMAD2 3PATHWAY | Regulation of cytoplasmic and nuclear SMAD2/3 signaling |
0.0 | 2.1 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
0.1 | 1.7 | PID ERB GENOMIC PATHWAY | Validated nuclear estrogen receptor beta network |
0.0 | 1.6 | PID P53 DOWNSTREAM PATHWAY | Direct p53 effectors |
0.1 | 1.5 | PID TRAIL PATHWAY | TRAIL signaling pathway |
0.0 | 1.4 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
0.1 | 1.3 | PID RETINOIC ACID PATHWAY | Retinoic acid receptors-mediated signaling |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.3 | 18.4 | REACTOME PURINE RIBONUCLEOSIDE MONOPHOSPHATE BIOSYNTHESIS | Genes involved in Purine ribonucleoside monophosphate biosynthesis |
0.4 | 11.8 | REACTOME PTM GAMMA CARBOXYLATION HYPUSINE FORMATION AND ARYLSULFATASE ACTIVATION | Genes involved in PTM: gamma carboxylation, hypusine formation and arylsulfatase activation |
0.6 | 9.0 | REACTOME E2F ENABLED INHIBITION OF PRE REPLICATION COMPLEX FORMATION | Genes involved in E2F-enabled inhibition of pre-replication complex formation |
0.4 | 7.9 | REACTOME PYRIMIDINE METABOLISM | Genes involved in Pyrimidine metabolism |
0.1 | 7.7 | REACTOME MITOTIC PROMETAPHASE | Genes involved in Mitotic Prometaphase |
0.2 | 7.4 | REACTOME EXTENSION OF TELOMERES | Genes involved in Extension of Telomeres |
0.1 | 5.7 | REACTOME MITOCHONDRIAL PROTEIN IMPORT | Genes involved in Mitochondrial Protein Import |
0.2 | 5.6 | REACTOME RNA POL II TRANSCRIPTION PRE INITIATION AND PROMOTER OPENING | Genes involved in RNA Polymerase II Transcription Pre-Initiation And Promoter Opening |
0.3 | 5.0 | REACTOME RNA POL III TRANSCRIPTION TERMINATION | Genes involved in RNA Polymerase III Transcription Termination |
0.4 | 4.7 | REACTOME MRNA DECAY BY 3 TO 5 EXORIBONUCLEASE | Genes involved in mRNA Decay by 3' to 5' Exoribonuclease |