PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
creb3l2 | dr11_v1_chr4_-_4751981_4751983 | -0.22 | 3.6e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr2_-_36658701 Show fit | 0.45 |
ENSDART00000184995
|
|
|
chr8_+_8699085 Show fit | 0.44 |
ENSDART00000021209
|
ubiquitously-expressed, prefoldin-like chaperone |
|
chr22_-_1359856 Show fit | 0.42 |
ENSDART00000182641
|
|
|
chr22_+_31059919 Show fit | 0.42 |
ENSDART00000077063
|
SEC13 homolog, nuclear pore and COPII coat complex component |
|
chr3_-_18384501 Show fit | 0.41 |
ENSDART00000027630
|
KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2a |
|
chr19_+_47405867 Show fit | 0.40 |
ENSDART00000041114
|
proteasome subunit beta 2 |
|
chr11_-_7156620 Show fit | 0.39 |
ENSDART00000172823
ENSDART00000172879 ENSDART00000078916 |
small integral membrane protein 7 |
|
chr5_+_69278089 Show fit | 0.39 |
ENSDART00000136656
|
selenoprotein M |
|
chr22_-_25043103 Show fit | 0.39 |
ENSDART00000015512
|
polymerase (RNA) III (DNA directed) polypeptide F |
|
chr7_-_26462831 Show fit | 0.35 |
ENSDART00000113543
|
metallo-beta-lactamase domain containing 1 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.6 | GO:0030199 | collagen fibril organization(GO:0030199) |
0.1 | 0.5 | GO:0000393 | spliceosomal conformational changes to generate catalytic conformation(GO:0000393) |
0.1 | 0.4 | GO:0070278 | extracellular matrix constituent secretion(GO:0070278) |
0.1 | 0.4 | GO:0006621 | protein retention in ER lumen(GO:0006621) |
0.0 | 0.4 | GO:0007080 | mitotic metaphase plate congression(GO:0007080) |
0.0 | 0.4 | GO:0045746 | negative regulation of Notch signaling pathway(GO:0045746) |
0.0 | 0.4 | GO:0006383 | transcription from RNA polymerase III promoter(GO:0006383) |
0.0 | 0.4 | GO:0010499 | proteasomal ubiquitin-independent protein catabolic process(GO:0010499) |
0.0 | 0.4 | GO:0006890 | retrograde vesicle-mediated transport, Golgi to ER(GO:0006890) |
0.1 | 0.3 | GO:0043393 | regulation of protein binding(GO:0043393) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 0.6 | GO:0031080 | nuclear pore outer ring(GO:0031080) |
0.0 | 0.5 | GO:0030663 | COPI-coated vesicle membrane(GO:0030663) |
0.1 | 0.4 | GO:0097125 | cyclin B1-CDK1 complex(GO:0097125) |
0.0 | 0.4 | GO:0016272 | prefoldin complex(GO:0016272) |
0.0 | 0.4 | GO:0044545 | NSL complex(GO:0044545) |
0.0 | 0.4 | GO:0005666 | DNA-directed RNA polymerase III complex(GO:0005666) |
0.0 | 0.4 | GO:0005839 | proteasome core complex(GO:0005839) |
0.1 | 0.3 | GO:0097224 | sperm connecting piece(GO:0097224) |
0.0 | 0.3 | GO:0000138 | Golgi trans cisterna(GO:0000138) |
0.0 | 0.3 | GO:0071012 | U2-type catalytic step 1 spliceosome(GO:0071006) catalytic step 1 spliceosome(GO:0071012) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.5 | GO:0003755 | peptidyl-prolyl cis-trans isomerase activity(GO:0003755) |
0.1 | 0.4 | GO:0046923 | ER retention sequence binding(GO:0046923) |
0.0 | 0.4 | GO:0070003 | threonine-type endopeptidase activity(GO:0004298) threonine-type peptidase activity(GO:0070003) |
0.0 | 0.4 | GO:0034062 | DNA-directed RNA polymerase activity(GO:0003899) RNA polymerase activity(GO:0034062) |
0.0 | 0.4 | GO:0005518 | collagen binding(GO:0005518) |
0.1 | 0.3 | GO:0032027 | myosin light chain binding(GO:0032027) |
0.0 | 0.3 | GO:0031720 | haptoglobin binding(GO:0031720) |
0.0 | 0.3 | GO:0022840 | leak channel activity(GO:0022840) potassium ion leak channel activity(GO:0022841) narrow pore channel activity(GO:0022842) |
0.1 | 0.2 | GO:0003919 | FMN adenylyltransferase activity(GO:0003919) |
0.0 | 0.2 | GO:0070180 | large ribosomal subunit rRNA binding(GO:0070180) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.3 | ST TYPE I INTERFERON PATHWAY | Type I Interferon (alpha/beta IFN) Pathway |
0.0 | 0.2 | PID S1P S1P4 PATHWAY | S1P4 pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.4 | REACTOME RECRUITMENT OF NUMA TO MITOTIC CENTROSOMES | Genes involved in Recruitment of NuMA to mitotic centrosomes |
0.0 | 0.4 | REACTOME RNA POL III CHAIN ELONGATION | Genes involved in RNA Polymerase III Chain Elongation |
0.0 | 0.4 | REACTOME ANTIGEN PRESENTATION FOLDING ASSEMBLY AND PEPTIDE LOADING OF CLASS I MHC | Genes involved in Antigen Presentation: Folding, assembly and peptide loading of class I MHC |
0.0 | 0.3 | REACTOME INTERFERON GAMMA SIGNALING | Genes involved in Interferon gamma signaling |
0.0 | 0.2 | REACTOME ADENYLATE CYCLASE INHIBITORY PATHWAY | Genes involved in Adenylate cyclase inhibitory pathway |
0.0 | 0.1 | REACTOME GAMMA CARBOXYLATION TRANSPORT AND AMINO TERMINAL CLEAVAGE OF PROTEINS | Genes involved in Gamma-carboxylation, transport, and amino-terminal cleavage of proteins |
0.0 | 0.1 | REACTOME COPI MEDIATED TRANSPORT | Genes involved in COPI Mediated Transport |
0.0 | 0.1 | REACTOME NEF MEDIATED DOWNREGULATION OF MHC CLASS I COMPLEX CELL SURFACE EXPRESSION | Genes involved in Nef mediated downregulation of MHC class I complex cell surface expression |