PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
ctcf | dr11_v1_chr18_+_22287084_22287188 | -0.36 | 1.3e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr8_-_22965214 Show fit | 9.41 |
ENSDART00000148178
|
elastin microfibril interfacer 3a |
|
chr3_+_14641962 Show fit | 8.67 |
ENSDART00000091070
|
zgc:158403 |
|
chr21_-_23331619 Show fit | 8.65 |
ENSDART00000007806
|
zinc finger and BTB domain containing 16a |
|
chr8_-_22964486 Show fit | 7.48 |
ENSDART00000112381
|
elastin microfibril interfacer 3a |
|
chr18_-_14677936 Show fit | 6.97 |
ENSDART00000111995
|
si:dkey-238o13.4 |
|
chr22_+_20135443 Show fit | 6.85 |
ENSDART00000143641
|
eukaryotic translation elongation factor 2a, tandem duplicate 1 |
|
chr21_-_19918286 Show fit | 6.77 |
ENSDART00000180816
|
protein phosphatase 1, regulatory subunit 3B |
|
chr11_-_41853874 Show fit | 6.40 |
ENSDART00000002556
|
MRT4 homolog, ribosome maturation factor |
|
chr13_-_33822550 Show fit | 6.13 |
ENSDART00000143703
|
fibronectin leucine rich transmembrane 3 |
|
chr10_-_40826657 Show fit | 6.09 |
ENSDART00000076304
|
proliferating cell nuclear antigen |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.6 | 16.9 | GO:0048570 | notochord morphogenesis(GO:0048570) |
0.5 | 9.2 | GO:0006278 | RNA-dependent DNA biosynthetic process(GO:0006278) telomere maintenance via telomerase(GO:0007004) |
0.1 | 8.7 | GO:0006414 | translational elongation(GO:0006414) |
0.7 | 8.6 | GO:0032481 | positive regulation of type I interferon production(GO:0032481) |
1.4 | 8.1 | GO:0045721 | negative regulation of gluconeogenesis(GO:0045721) |
0.5 | 7.0 | GO:0051131 | chaperone-mediated protein complex assembly(GO:0051131) |
2.3 | 6.8 | GO:0005981 | regulation of glycogen catabolic process(GO:0005981) |
0.2 | 6.7 | GO:0006367 | transcription initiation from RNA polymerase II promoter(GO:0006367) |
0.3 | 6.4 | GO:0000027 | ribosomal large subunit assembly(GO:0000027) |
0.2 | 6.2 | GO:0038061 | NIK/NF-kappaB signaling(GO:0038061) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 10.9 | GO:0005654 | nucleoplasm(GO:0005654) |
0.0 | 10.1 | GO:0005819 | spindle(GO:0005819) |
0.0 | 9.0 | GO:1990904 | ribonucleoprotein complex(GO:1990904) |
2.9 | 8.6 | GO:0031390 | Ctf18 RFC-like complex(GO:0031390) |
0.7 | 8.2 | GO:0043240 | Fanconi anaemia nuclear complex(GO:0043240) |
0.4 | 7.9 | GO:0000783 | telomere cap complex(GO:0000782) nuclear telomere cap complex(GO:0000783) nuclear chromosome, telomeric region(GO:0000784) |
0.8 | 7.0 | GO:0016272 | prefoldin complex(GO:0016272) |
0.0 | 6.9 | GO:0005730 | nucleolus(GO:0005730) |
0.4 | 6.8 | GO:0000164 | protein phosphatase type 1 complex(GO:0000164) |
1.3 | 6.7 | GO:0005673 | transcription factor TFIIE complex(GO:0005673) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 42.5 | GO:0003677 | DNA binding(GO:0003677) |
0.1 | 14.2 | GO:0046982 | protein heterodimerization activity(GO:0046982) |
0.0 | 9.3 | GO:0003723 | RNA binding(GO:0003723) |
0.1 | 8.9 | GO:0001227 | transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001227) |
0.2 | 8.7 | GO:0003746 | translation elongation factor activity(GO:0003746) |
0.5 | 8.2 | GO:0022884 | macromolecule transmembrane transporter activity(GO:0022884) |
0.4 | 7.9 | GO:0009982 | pseudouridine synthase activity(GO:0009982) |
2.3 | 7.0 | GO:0071532 | ankyrin repeat binding(GO:0071532) |
0.2 | 7.0 | GO:0051087 | chaperone binding(GO:0051087) |
0.5 | 6.8 | GO:2001069 | glycogen binding(GO:2001069) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 13.3 | PID TELOMERASE PATHWAY | Regulation of Telomerase |
0.3 | 9.7 | PID BARD1 PATHWAY | BARD1 signaling events |
0.2 | 8.3 | PID ATR PATHWAY | ATR signaling pathway |
0.2 | 6.7 | PID P53 REGULATION PATHWAY | p53 pathway |
0.2 | 5.9 | PID AURORA A PATHWAY | Aurora A signaling |
0.2 | 4.7 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
0.1 | 4.2 | WNT SIGNALING | Genes related to Wnt-mediated signal transduction |
0.0 | 4.1 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
0.1 | 4.0 | PID CMYB PATHWAY | C-MYB transcription factor network |
0.1 | 2.9 | PID PLK1 PATHWAY | PLK1 signaling events |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 10.0 | REACTOME PREFOLDIN MEDIATED TRANSFER OF SUBSTRATE TO CCT TRIC | Genes involved in Prefoldin mediated transfer of substrate to CCT/TriC |
0.2 | 9.1 | REACTOME RNA POL II TRANSCRIPTION PRE INITIATION AND PROMOTER OPENING | Genes involved in RNA Polymerase II Transcription Pre-Initiation And Promoter Opening |
0.6 | 7.9 | REACTOME PACKAGING OF TELOMERE ENDS | Genes involved in Packaging Of Telomere Ends |
0.1 | 7.7 | REACTOME APC C CDH1 MEDIATED DEGRADATION OF CDC20 AND OTHER APC C CDH1 TARGETED PROTEINS IN LATE MITOSIS EARLY G1 | Genes involved in APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1 |
0.3 | 6.5 | REACTOME FANCONI ANEMIA PATHWAY | Genes involved in Fanconi Anemia pathway |
0.5 | 6.1 | REACTOME REMOVAL OF THE FLAP INTERMEDIATE FROM THE C STRAND | Genes involved in Removal of the Flap Intermediate from the C-strand |
0.2 | 6.1 | REACTOME NEP NS2 INTERACTS WITH THE CELLULAR EXPORT MACHINERY | Genes involved in NEP/NS2 Interacts with the Cellular Export Machinery |
0.2 | 5.1 | REACTOME PTM GAMMA CARBOXYLATION HYPUSINE FORMATION AND ARYLSULFATASE ACTIVATION | Genes involved in PTM: gamma carboxylation, hypusine formation and arylsulfatase activation |
0.4 | 5.0 | REACTOME METABOLISM OF PORPHYRINS | Genes involved in Metabolism of porphyrins |
0.5 | 4.4 | REACTOME GAMMA CARBOXYLATION TRANSPORT AND AMINO TERMINAL CLEAVAGE OF PROTEINS | Genes involved in Gamma-carboxylation, transport, and amino-terminal cleavage of proteins |