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PRJEB1986: zebrafish developmental stages transcriptome

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Results for cux1a

Z-value: 0.34

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Transcription factors associated with cux1a

Gene Symbol Gene ID Gene Info
cux1a
ENSDARG00000078459 cut-like homeobox 1a

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
cux1adr11_v1_chr10_-_33156789_33156789-0.761.4e-04Click!

Activity profile of cux1a motif

Sorted Z-values of cux1a motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr16_+_1383914 0.99 ENSDART00000185089
cers2b
ceramide synthase 2b
chr7_+_32695954 0.71 ENSDART00000184425
slc39a13
solute carrier family 39 (zinc transporter), member 13
chr8_+_16758304 0.63 ENSDART00000133514
elovl7a
ELOVL fatty acid elongase 7a
chr2_-_32513538 0.62 ENSDART00000056640
abcf2a
ATP-binding cassette, sub-family F (GCN20), member 2a
chr21_-_19919918 0.58 ENSDART00000137307
ENSDART00000142523
ENSDART00000065670
ppp1r3b
protein phosphatase 1, regulatory subunit 3B
chr19_+_14059349 0.49 ENSDART00000166230
tpbga
trophoblast glycoprotein a
chr22_+_21516689 0.49 ENSDART00000105550
ENSDART00000136374
mier2
mesoderm induction early response 1, family member 2
chr13_-_4664403 0.49 ENSDART00000023803
ENSDART00000177957
c1d
C1D nuclear receptor corepressor
chr16_+_4658250 0.49 ENSDART00000006212
LIN28A
si:ch1073-284b18.2
chr14_-_25985698 0.44 ENSDART00000172909
ENSDART00000123053
atox1
antioxidant 1 copper chaperone
chr22_+_13917311 0.44 ENSDART00000022654
sh3bp4a
SH3-domain binding protein 4a
chr5_+_41996889 0.43 ENSDART00000097580
pigl
phosphatidylinositol glycan anchor biosynthesis, class L
chr17_-_7792376 0.42 ENSDART00000064655
zbtb2a
zinc finger and BTB domain containing 2a
chr10_-_11397590 0.39 ENSDART00000064212
srek1ip1
SREK1-interacting protein 1
chr23_+_9353552 0.38 ENSDART00000163298
BX511246.1

chr6_+_38896158 0.37 ENSDART00000029930
ENSDART00000131347
slc48a1b
solute carrier family 48 (heme transporter), member 1b
chr12_+_14149686 0.37 ENSDART00000123741
kbtbd2
kelch repeat and BTB (POZ) domain containing 2
chr23_-_36446307 0.37 ENSDART00000136623
zgc:174906
zgc:174906
chr5_+_31605322 0.35 ENSDART00000135037
si:dkey-220k22.3
si:dkey-220k22.3
chr11_-_20956309 0.35 ENSDART00000188659
CABZ01008739.1

chr2_-_56649883 0.35 ENSDART00000191786
gpx4b
glutathione peroxidase 4b
chr7_-_39751540 0.35 ENSDART00000016803
grpel1
GrpE-like 1, mitochondrial
chr24_-_3407507 0.33 ENSDART00000132648
nck1b
NCK adaptor protein 1b
chr17_+_24597001 0.33 ENSDART00000191834
rlf
rearranged L-myc fusion
chr18_-_40481028 0.31 ENSDART00000134177
zgc:101040
zgc:101040
chr16_-_25380903 0.31 ENSDART00000086375
ENSDART00000188587
adnp2a
ADNP homeobox 2a
chr3_-_30153242 0.30 ENSDART00000077089
nucb1
nucleobindin 1
chr5_+_37729207 0.29 ENSDART00000184378
cdc42ep2
CDC42 effector protein (Rho GTPase binding) 2
chr5_-_26893310 0.28 ENSDART00000126669
lman2lb
lectin, mannose-binding 2-like b
chr11_-_16152105 0.27 ENSDART00000081062
arpc4l
actin related protein 2/3 complex, subunit 4, like
chr12_-_7607114 0.25 ENSDART00000158095
slc16a9b
solute carrier family 16, member 9b
chr11_-_16152400 0.25 ENSDART00000123665
arpc4l
actin related protein 2/3 complex, subunit 4, like
chr21_-_20120543 0.23 ENSDART00000065664
dusp4
dual specificity phosphatase 4
chr11_+_16152316 0.23 ENSDART00000081054
tada3l
transcriptional adaptor 3 (NGG1 homolog, yeast)-like
chr3_-_30152836 0.23 ENSDART00000165920
nucb1
nucleobindin 1
chr3_-_37082618 0.22 ENSDART00000026701
ENSDART00000110716
tubg1
tubulin, gamma 1
chr12_-_9700605 0.22 ENSDART00000161063
heatr1
HEAT repeat containing 1
chr7_+_33152723 0.22 ENSDART00000132658
si:ch211-194p6.10
si:ch211-194p6.10
chr15_+_36966369 0.21 ENSDART00000163622
kirrel3l
kirre like nephrin family adhesion molecule 3, like
chr7_-_25895189 0.21 ENSDART00000173599
ENSDART00000079235
ENSDART00000173786
ENSDART00000173602
ENSDART00000079245
ENSDART00000187568
ENSDART00000173505
cd99l2
CD99 molecule-like 2
chr12_-_4185554 0.21 ENSDART00000152313
si:dkey-32n7.7
si:dkey-32n7.7
chr22_-_25078650 0.19 ENSDART00000131811
ENSDART00000141546
kat14
lysine acetyltransferase 14
chr11_+_1522136 0.19 ENSDART00000002318
srsf6b
serine/arginine-rich splicing factor 6b
chr22_+_8012532 0.19 ENSDART00000159439
CABZ01034698.1

chr16_+_39242339 0.18 ENSDART00000102510
zgc:77056
zgc:77056
chr8_+_48491387 0.17 ENSDART00000086053
PRDM16
si:ch211-263k4.2
chr24_+_31374324 0.15 ENSDART00000172335
ENSDART00000163162
cpne3
copine III
chr20_-_54075136 0.15 ENSDART00000074255
mgat2
mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase
chr18_+_5490668 0.14 ENSDART00000167035
mibp2
muscle-specific beta 1 integrin binding protein 2
chr2_-_51454868 0.14 ENSDART00000172550
si:dkeyp-104b3.2
si:dkeyp-104b3.2
chr13_-_22961605 0.13 ENSDART00000143112
ENSDART00000057641
tspan15
tetraspanin 15
chr14_-_32486757 0.12 ENSDART00000148830
mcf2a
MCF.2 cell line derived transforming sequence a
chr11_-_12673637 0.11 ENSDART00000186058
CR450764.7

chr17_-_30839338 0.11 ENSDART00000139707
gdf7
growth differentiation factor 7
chr18_-_6943577 0.10 ENSDART00000132399
si:dkey-266m15.6
si:dkey-266m15.6
chr17_+_48164536 0.09 ENSDART00000161750
ENSDART00000156923
plekhd1
pleckstrin homology domain containing, family D (with coiled-coil domains) member 1
chr15_-_16704417 0.09 ENSDART00000155163
caln1
calneuron 1
chr25_-_6082509 0.08 ENSDART00000104755
cpeb1a
cytoplasmic polyadenylation element binding protein 1a
chr2_+_59041081 0.08 ENSDART00000067736
stk11
serine/threonine kinase 11
chr6_-_29105727 0.08 ENSDART00000184355
fam69ab
family with sequence similarity 69, member Ab
chr2_+_7715810 0.08 ENSDART00000130781
eif4a2
eukaryotic translation initiation factor 4A, isoform 2
chr22_-_24307598 0.08 ENSDART00000166070
si:ch211-117l17.7
si:ch211-117l17.7
chr2_-_51275873 0.08 ENSDART00000168019
si:ch211-215e19.4
si:ch211-215e19.4
chr1_+_55703120 0.08 ENSDART00000141089
adgre6
adhesion G protein-coupled receptor E6
chr12_-_29305220 0.08 ENSDART00000153458
sh2d4bb
SH2 domain containing 4Bb
chr25_+_21324588 0.08 ENSDART00000151842
lrrn3a
leucine rich repeat neuronal 3a
chr3_+_57820913 0.08 ENSDART00000168101
CU571328.1

chr22_+_28969071 0.07 ENSDART00000163427
pimr95
Pim proto-oncogene, serine/threonine kinase, related 95
chrM_+_9735 0.07 ENSDART00000093613
mt-co3
cytochrome c oxidase III, mitochondrial
chr11_-_42396302 0.06 ENSDART00000165624
slmapa
sarcolemma associated protein a
chr17_+_53435279 0.06 ENSDART00000126630
cx52.9
connexin 52.9
chr3_-_5555500 0.04 ENSDART00000176133
ENSDART00000057464
trim35-31
tripartite motif containing 35-31
chr23_-_33986762 0.04 ENSDART00000144609
tmed4
transmembrane p24 trafficking protein 4
chr11_-_12705608 0.02 ENSDART00000158937
ENSDART00000114391
zgc:174353
zgc:174353
chr17_+_37249736 0.02 ENSDART00000189686
CR318625.1

chr7_-_56766973 0.01 ENSDART00000020967
csnk2a2a
casein kinase 2, alpha prime polypeptide a
chr22_+_29067388 0.00 ENSDART00000133673
pimr100
Pim proto-oncogene, serine/threonine kinase, related 100
chr18_+_7611298 0.00 ENSDART00000062156
odf3b
outer dense fiber of sperm tails 3B

Network of associatons between targets according to the STRING database.

First level regulatory network of cux1a

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.6 GO:0005981 regulation of glycogen catabolic process(GO:0005981)
0.1 0.5 GO:0060829 negative regulation of canonical Wnt signaling pathway involved in neural plate anterior/posterior pattern formation(GO:0060829)
0.1 0.4 GO:0034260 negative regulation of GTPase activity(GO:0034260)
0.1 0.2 GO:0000212 meiotic spindle organization(GO:0000212)
0.1 0.4 GO:0006878 cellular copper ion homeostasis(GO:0006878)
0.0 0.4 GO:1901678 heme transport(GO:0015886) iron coordination entity transport(GO:1901678)
0.0 0.7 GO:0071577 zinc II ion transmembrane transport(GO:0071577)
0.0 0.2 GO:0045943 positive regulation of transcription from RNA polymerase I promoter(GO:0045943)
0.0 0.6 GO:0019368 fatty acid elongation, saturated fatty acid(GO:0019367) fatty acid elongation, unsaturated fatty acid(GO:0019368) fatty acid elongation, monounsaturated fatty acid(GO:0034625) fatty acid elongation, polyunsaturated fatty acid(GO:0034626)
0.0 0.3 GO:0031272 pseudopodium organization(GO:0031268) pseudopodium assembly(GO:0031269) regulation of pseudopodium assembly(GO:0031272) positive regulation of pseudopodium assembly(GO:0031274)
0.0 0.2 GO:0070373 negative regulation of ERK1 and ERK2 cascade(GO:0070373)
0.0 0.1 GO:0009312 oligosaccharide biosynthetic process(GO:0009312)
0.0 0.3 GO:0030150 protein import into mitochondrial matrix(GO:0030150)
0.0 1.0 GO:0046513 ceramide biosynthetic process(GO:0046513)
0.0 0.4 GO:0006506 GPI anchor biosynthetic process(GO:0006506)
0.0 0.5 GO:0000460 maturation of 5.8S rRNA(GO:0000460)
0.0 0.3 GO:0043249 erythrocyte maturation(GO:0043249)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.3 GO:0001405 presequence translocase-associated import motor(GO:0001405)
0.0 0.4 GO:0005671 Ada2/Gcn5/Ada3 transcription activator complex(GO:0005671)
0.0 0.6 GO:0000164 protein phosphatase type 1 complex(GO:0000164)
0.0 0.5 GO:0000178 exosome (RNase complex)(GO:0000178)
0.0 0.2 GO:0000930 gamma-tubulin complex(GO:0000930)
0.0 0.8 GO:0005793 endoplasmic reticulum-Golgi intermediate compartment(GO:0005793)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.4 GO:0016531 copper chaperone activity(GO:0016531)
0.1 0.3 GO:0047066 phospholipid-hydroperoxide glutathione peroxidase activity(GO:0047066)
0.1 1.0 GO:0050291 sphingosine N-acyltransferase activity(GO:0050291)
0.1 0.3 GO:0004060 arylamine N-acetyltransferase activity(GO:0004060)
0.0 0.4 GO:0015232 heme transporter activity(GO:0015232)
0.0 0.6 GO:2001069 glycogen binding(GO:2001069)
0.0 0.3 GO:0000774 adenyl-nucleotide exchange factor activity(GO:0000774)
0.0 0.6 GO:0102338 fatty acid elongase activity(GO:0009922) 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338)
0.0 0.7 GO:0005385 zinc ion transmembrane transporter activity(GO:0005385)
0.0 0.4 GO:0005092 GDP-dissociation inhibitor activity(GO:0005092)
0.0 0.3 GO:0005537 mannose binding(GO:0005537)
0.0 0.1 GO:0050262 ribosylnicotinamide kinase activity(GO:0050262)
0.0 0.5 GO:0001103 RNA polymerase II repressing transcription factor binding(GO:0001103)
0.0 0.2 GO:0008330 protein tyrosine/threonine phosphatase activity(GO:0008330)
0.0 0.2 GO:0030515 snoRNA binding(GO:0030515)
0.0 0.4 GO:0019213 deacetylase activity(GO:0019213)
0.0 0.2 GO:0070492 oligosaccharide binding(GO:0070492)
0.0 0.4 GO:0005164 tumor necrosis factor receptor binding(GO:0005164)

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.4 REACTOME SYNTHESIS OF GLYCOSYLPHOSPHATIDYLINOSITOL GPI Genes involved in Synthesis of glycosylphosphatidylinositol (GPI)
0.0 0.2 REACTOME RECRUITMENT OF NUMA TO MITOTIC CENTROSOMES Genes involved in Recruitment of NuMA to mitotic centrosomes
0.0 0.2 REACTOME ERKS ARE INACTIVATED Genes involved in ERKs are inactivated