PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
cux2b | dr11_v1_chr8_-_4327473_4327473 | -0.14 | 5.6e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr19_-_48039400 Show fit | 1.54 |
ENSDART00000166748
ENSDART00000165921 |
colony stimulating factor 3 (granulocyte) b |
|
chr2_-_42958619 Show fit | 1.24 |
ENSDART00000144317
|
otoconin 90 |
|
chr12_-_20340543 Show fit | 1.17 |
ENSDART00000055623
|
hemoglobin beta embryonic-3 |
|
chr7_+_32695954 Show fit | 0.92 |
ENSDART00000184425
|
solute carrier family 39 (zinc transporter), member 13 |
|
chr23_-_45705525 Show fit | 0.80 |
ENSDART00000148959
|
endothelin receptor type Ab |
|
chr21_-_34844059 Show fit | 0.69 |
ENSDART00000136402
|
zgc:56585 |
|
chr1_+_277731 Show fit | 0.67 |
ENSDART00000133431
|
centromere protein E |
|
chr16_+_54210554 Show fit | 0.66 |
ENSDART00000172622
|
X-ray repair complementing defective repair in Chinese hamster cells 1 |
|
chr6_-_17999776 Show fit | 0.64 |
ENSDART00000183048
ENSDART00000181577 ENSDART00000170597 |
regulatory associated protein of MTOR, complex 1 |
|
chr19_-_41518922 Show fit | 0.63 |
ENSDART00000164483
ENSDART00000062080 |
chromatin accessibility complex 1 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.5 | GO:0071425 | hematopoietic stem cell proliferation(GO:0071425) |
0.1 | 1.5 | GO:0080111 | DNA demethylation(GO:0080111) |
0.3 | 1.3 | GO:0000012 | single strand break repair(GO:0000012) |
0.1 | 1.2 | GO:1903963 | icosanoid secretion(GO:0032309) arachidonic acid secretion(GO:0050482) arachidonate transport(GO:1903963) |
0.3 | 1.1 | GO:0033301 | cell cycle comprising mitosis without cytokinesis(GO:0033301) |
0.0 | 1.1 | GO:0030490 | maturation of SSU-rRNA(GO:0030490) |
0.2 | 1.0 | GO:0002568 | somatic diversification of T cell receptor genes(GO:0002568) somatic recombination of T cell receptor gene segments(GO:0002681) T cell receptor V(D)J recombination(GO:0033153) |
0.1 | 1.0 | GO:0034724 | DNA replication-independent nucleosome organization(GO:0034724) |
0.0 | 1.0 | GO:0015671 | oxygen transport(GO:0015671) |
0.0 | 1.0 | GO:0060972 | left/right pattern formation(GO:0060972) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.6 | GO:0016607 | nuclear speck(GO:0016607) |
0.0 | 1.5 | GO:0090575 | RNA polymerase II transcription factor complex(GO:0090575) |
0.0 | 1.2 | GO:0000775 | chromosome, centromeric region(GO:0000775) |
0.0 | 1.1 | GO:0016592 | mediator complex(GO:0016592) |
0.1 | 1.0 | GO:0031838 | haptoglobin-hemoglobin complex(GO:0031838) |
0.0 | 0.9 | GO:0005814 | centriole(GO:0005814) |
0.0 | 0.8 | GO:0000781 | chromosome, telomeric region(GO:0000781) |
0.2 | 0.7 | GO:0070209 | ASTRA complex(GO:0070209) |
0.1 | 0.7 | GO:0035101 | FACT complex(GO:0035101) |
0.0 | 0.7 | GO:1990907 | beta-catenin-TCF complex(GO:1990907) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 1.4 | GO:0008309 | double-stranded DNA exodeoxyribonuclease activity(GO:0008309) double-stranded DNA 3'-5' exodeoxyribonuclease activity(GO:0008311) |
0.0 | 1.3 | GO:0003684 | damaged DNA binding(GO:0003684) |
0.0 | 1.2 | GO:0004623 | phospholipase A2 activity(GO:0004623) |
0.0 | 1.2 | GO:0008574 | ATP-dependent microtubule motor activity, plus-end-directed(GO:0008574) |
0.1 | 1.1 | GO:0001217 | bacterial-type RNA polymerase transcription factor activity, sequence-specific DNA binding(GO:0001130) bacterial-type RNA polymerase transcriptional repressor activity, sequence-specific DNA binding(GO:0001217) |
0.1 | 1.0 | GO:0031720 | haptoglobin binding(GO:0031720) |
0.0 | 0.9 | GO:0008013 | beta-catenin binding(GO:0008013) |
0.1 | 0.8 | GO:0004962 | endothelin receptor activity(GO:0004962) |
0.0 | 0.8 | GO:0005385 | zinc ion transmembrane transporter activity(GO:0005385) |
0.1 | 0.7 | GO:0035804 | structural constituent of egg coat(GO:0035804) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.1 | PID BETA CATENIN NUC PATHWAY | Regulation of nuclear beta catenin signaling and target gene transcription |
0.0 | 1.9 | PID PLK1 PATHWAY | PLK1 signaling events |
0.1 | 1.5 | PID HIF2PATHWAY | HIF-2-alpha transcription factor network |
0.0 | 1.5 | PID FOXM1 PATHWAY | FOXM1 transcription factor network |
0.0 | 1.0 | PID AR PATHWAY | Coregulation of Androgen receptor activity |
0.0 | 0.8 | PID LKB1 PATHWAY | LKB1 signaling events |
0.0 | 0.6 | PID DELTA NP63 PATHWAY | Validated transcriptional targets of deltaNp63 isoforms |
0.1 | 0.4 | SA REG CASCADE OF CYCLIN EXPR | Expression of cyclins regulates progression through the cell cycle by activating cyclin-dependent kinases. |
0.0 | 0.4 | PID CASPASE PATHWAY | Caspase cascade in apoptosis |
0.0 | 0.3 | PID INTEGRIN4 PATHWAY | Alpha6 beta4 integrin-ligand interactions |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 2.7 | REACTOME RESOLUTION OF AP SITES VIA THE SINGLE NUCLEOTIDE REPLACEMENT PATHWAY | Genes involved in Resolution of AP sites via the single-nucleotide replacement pathway |
0.0 | 1.2 | REACTOME LOSS OF NLP FROM MITOTIC CENTROSOMES | Genes involved in Loss of Nlp from mitotic centrosomes |
0.0 | 0.9 | REACTOME METABOLISM OF VITAMINS AND COFACTORS | Genes involved in Metabolism of vitamins and cofactors |
0.0 | 0.8 | REACTOME CDC6 ASSOCIATION WITH THE ORC ORIGIN COMPLEX | Genes involved in CDC6 association with the ORC:origin complex |
0.0 | 0.8 | REACTOME MEIOTIC SYNAPSIS | Genes involved in Meiotic Synapsis |
0.0 | 0.7 | REACTOME ELONGATION ARREST AND RECOVERY | Genes involved in Elongation arrest and recovery |
0.1 | 0.6 | REACTOME REGULATION OF AMPK ACTIVITY VIA LKB1 | Genes involved in Regulation of AMPK activity via LKB1 |
0.0 | 0.5 | REACTOME SYNTHESIS OF PIPS AT THE LATE ENDOSOME MEMBRANE | Genes involved in Synthesis of PIPs at the late endosome membrane |
0.0 | 0.5 | REACTOME YAP1 AND WWTR1 TAZ STIMULATED GENE EXPRESSION | Genes involved in YAP1- and WWTR1 (TAZ)-stimulated gene expression |
0.0 | 0.5 | REACTOME SIGNALING BY HIPPO | Genes involved in Signaling by Hippo |