PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
dlx1a | dr11_v1_chr9_+_3388099_3388099 | -0.43 | 6.3e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr23_+_32101202 Show fit | 1.97 |
ENSDART00000000992
|
zgc:56699 |
|
chr11_-_6877973 Show fit | 1.66 |
ENSDART00000160271
|
DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 |
|
chr25_+_14507567 Show fit | 1.50 |
ENSDART00000015681
|
developing brain homeobox 1b |
|
chr7_-_48667056 Show fit | 1.43 |
ENSDART00000006378
|
cyclin-dependent kinase inhibitor 1Ca |
|
chr22_-_36530902 Show fit | 1.17 |
ENSDART00000056188
|
info polymerase (RNA) II (DNA directed) polypeptide H |
|
chr16_+_54209504 Show fit | 1.17 |
ENSDART00000020033
|
X-ray repair complementing defective repair in Chinese hamster cells 1 |
|
chr23_-_42232124 Show fit | 1.16 |
ENSDART00000149944
|
glutathione peroxidase 7 |
|
chr4_+_19700308 Show fit | 1.12 |
ENSDART00000027919
|
paired box 4 |
|
chr6_+_21001264 Show fit | 1.06 |
ENSDART00000044519
ENSDART00000151278 |
connexin 44.2 |
|
chr20_+_11731039 Show fit | 0.96 |
ENSDART00000152215
ENSDART00000152585 |
si:ch211-155o21.3 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.6 | GO:0006364 | rRNA processing(GO:0006364) |
0.1 | 1.8 | GO:0010499 | proteasomal ubiquitin-independent protein catabolic process(GO:0010499) |
0.0 | 1.6 | GO:0003333 | amino acid transmembrane transport(GO:0003333) |
0.2 | 1.5 | GO:0034433 | steroid esterification(GO:0034433) sterol esterification(GO:0034434) cholesterol esterification(GO:0034435) |
0.0 | 1.5 | GO:0007283 | spermatogenesis(GO:0007283) |
0.3 | 1.4 | GO:0000012 | single strand break repair(GO:0000012) |
0.2 | 1.4 | GO:0000455 | enzyme-directed rRNA pseudouridine synthesis(GO:0000455) |
0.2 | 1.4 | GO:1904030 | negative regulation of cyclin-dependent protein serine/threonine kinase activity(GO:0045736) negative regulation of cyclin-dependent protein kinase activity(GO:1904030) |
0.0 | 1.4 | GO:0006888 | ER to Golgi vesicle-mediated transport(GO:0006888) |
0.0 | 1.3 | GO:0008033 | tRNA processing(GO:0008033) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 3.5 | GO:0005730 | nucleolus(GO:0005730) |
0.0 | 2.8 | GO:0005764 | lysosome(GO:0005764) |
0.1 | 1.6 | GO:0005665 | DNA-directed RNA polymerase II, core complex(GO:0005665) |
0.0 | 1.6 | GO:0000421 | autophagosome membrane(GO:0000421) |
0.0 | 1.4 | GO:0045271 | mitochondrial respiratory chain complex I(GO:0005747) NADH dehydrogenase complex(GO:0030964) respiratory chain complex I(GO:0045271) |
0.0 | 1.3 | GO:0015935 | small ribosomal subunit(GO:0015935) |
0.1 | 1.1 | GO:0034364 | high-density lipoprotein particle(GO:0034364) |
0.0 | 1.1 | GO:0032040 | small-subunit processome(GO:0032040) |
0.1 | 1.0 | GO:0005839 | proteasome core complex(GO:0005839) |
0.0 | 1.0 | GO:0005686 | U2 snRNP(GO:0005686) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.2 | GO:0009982 | pseudouridine synthase activity(GO:0009982) |
0.1 | 1.8 | GO:0032266 | phosphatidylinositol-3-phosphate binding(GO:0032266) |
0.0 | 1.8 | GO:0004722 | protein serine/threonine phosphatase activity(GO:0004722) |
0.0 | 1.5 | GO:0003724 | RNA helicase activity(GO:0003724) |
0.2 | 1.4 | GO:0004861 | cyclin-dependent protein serine/threonine kinase inhibitor activity(GO:0004861) |
0.3 | 1.3 | GO:0009374 | biotin binding(GO:0009374) |
0.1 | 1.2 | GO:0003886 | DNA (cytosine-5-)-methyltransferase activity(GO:0003886) |
0.1 | 1.2 | GO:0005315 | inorganic phosphate transmembrane transporter activity(GO:0005315) |
0.1 | 1.2 | GO:0004602 | glutathione peroxidase activity(GO:0004602) |
0.0 | 1.2 | GO:0003684 | damaged DNA binding(GO:0003684) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 3.8 | NABA ECM REGULATORS | Genes encoding enzymes and their regulators involved in the remodeling of the extracellular matrix |
0.1 | 2.4 | PID FOXM1 PATHWAY | FOXM1 transcription factor network |
0.0 | 1.5 | PID P53 REGULATION PATHWAY | p53 pathway |
0.0 | 1.1 | PID PRL SIGNALING EVENTS PATHWAY | Signaling events mediated by PRL |
0.1 | 1.0 | PID P38 MK2 PATHWAY | p38 signaling mediated by MAPKAP kinases |
0.0 | 1.0 | PID BARD1 PATHWAY | BARD1 signaling events |
0.0 | 1.0 | PID TELOMERASE PATHWAY | Regulation of Telomerase |
0.0 | 1.0 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
0.0 | 0.8 | PID CMYB PATHWAY | C-MYB transcription factor network |
0.0 | 0.7 | PID AURORA A PATHWAY | Aurora A signaling |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 3.1 | REACTOME DESTABILIZATION OF MRNA BY AUF1 HNRNP D0 | Genes involved in Destabilization of mRNA by AUF1 (hnRNP D0) |
0.0 | 2.0 | REACTOME TRANSLATION | Genes involved in Translation |
0.1 | 1.9 | REACTOME VIRAL MESSENGER RNA SYNTHESIS | Genes involved in Viral Messenger RNA Synthesis |
0.0 | 1.3 | REACTOME CHROMOSOME MAINTENANCE | Genes involved in Chromosome Maintenance |
0.0 | 1.3 | REACTOME MITOTIC PROMETAPHASE | Genes involved in Mitotic Prometaphase |
0.1 | 1.2 | REACTOME RESOLUTION OF AP SITES VIA THE SINGLE NUCLEOTIDE REPLACEMENT PATHWAY | Genes involved in Resolution of AP sites via the single-nucleotide replacement pathway |
0.1 | 1.1 | REACTOME PURINE RIBONUCLEOSIDE MONOPHOSPHATE BIOSYNTHESIS | Genes involved in Purine ribonucleoside monophosphate biosynthesis |
0.0 | 1.1 | REACTOME INHIBITION OF THE PROTEOLYTIC ACTIVITY OF APC C REQUIRED FOR THE ONSET OF ANAPHASE BY MITOTIC SPINDLE CHECKPOINT COMPONENTS | Genes involved in Inhibition of the proteolytic activity of APC/C required for the onset of anaphase by mitotic spindle checkpoint components |
0.0 | 1.1 | REACTOME GLYCOSPHINGOLIPID METABOLISM | Genes involved in Glycosphingolipid metabolism |
0.0 | 1.0 | REACTOME FORMATION OF THE TERNARY COMPLEX AND SUBSEQUENTLY THE 43S COMPLEX | Genes involved in Formation of the ternary complex, and subsequently, the 43S complex |