PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
dlx3b | dr11_v1_chr12_+_5708400_5708400 | -0.68 | 1.4e-03 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr17_-_15546862 Show fit | 1.44 |
ENSDART00000091021
|
collagen, type X, alpha 1a |
|
chr14_-_30587814 Show fit | 1.44 |
ENSDART00000144912
ENSDART00000149714 |
transmembrane protein 265 |
|
chr15_+_47903864 Show fit | 1.34 |
ENSDART00000063835
|
orthodenticle homolog 5 |
|
chr25_-_32869794 Show fit | 1.29 |
ENSDART00000162784
|
transmembrane protein 266 |
|
chr11_+_30244356 Show fit | 1.24 |
ENSDART00000036050
ENSDART00000150080 |
retinoschisin 1a |
|
chr16_+_5774977 Show fit | 1.11 |
ENSDART00000134202
|
cholecystokinin a |
|
chr3_-_31079186 Show fit | 1.09 |
ENSDART00000145636
ENSDART00000140569 |
elongin B elongin B |
|
chr25_+_29160102 Show fit | 1.08 |
ENSDART00000162854
|
pyruvate kinase M1/2b |
|
chr3_-_21280373 Show fit | 1.00 |
ENSDART00000003939
|
synaptogyrin 1a |
|
chr21_-_10488379 Show fit | 0.99 |
ENSDART00000163878
|
hyperpolarization activated cyclic nucleotide-gated potassium channel 1 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.3 | GO:0032922 | circadian regulation of gene expression(GO:0032922) |
0.0 | 1.1 | GO:0007586 | digestion(GO:0007586) |
0.0 | 1.1 | GO:0006368 | transcription elongation from RNA polymerase II promoter(GO:0006368) |
0.1 | 1.0 | GO:0035677 | posterior lateral line neuromast hair cell development(GO:0035677) |
0.1 | 0.9 | GO:0097105 | presynaptic membrane organization(GO:0097090) postsynaptic membrane assembly(GO:0097104) presynaptic membrane assembly(GO:0097105) |
0.0 | 0.9 | GO:0060319 | primitive erythrocyte differentiation(GO:0060319) |
0.0 | 0.9 | GO:0021761 | limbic system development(GO:0021761) hypothalamus development(GO:0021854) |
0.0 | 0.9 | GO:0032869 | cellular response to insulin stimulus(GO:0032869) |
0.2 | 0.8 | GO:0060159 | regulation of dopamine receptor signaling pathway(GO:0060159) |
0.0 | 0.8 | GO:0098943 | neurotransmitter receptor transport, postsynaptic endosome to lysosome(GO:0098943) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.4 | GO:0044295 | axonal growth cone(GO:0044295) |
0.0 | 1.4 | GO:0005581 | collagen trimer(GO:0005581) |
0.2 | 1.1 | GO:0030891 | VCB complex(GO:0030891) |
0.0 | 1.0 | GO:0031594 | neuromuscular junction(GO:0031594) |
0.3 | 0.9 | GO:0060077 | inhibitory synapse(GO:0060077) |
0.0 | 0.9 | GO:0000118 | histone deacetylase complex(GO:0000118) |
0.0 | 0.8 | GO:0044298 | neuronal cell body membrane(GO:0032809) cell body membrane(GO:0044298) |
0.0 | 0.8 | GO:0099634 | postsynaptic density membrane(GO:0098839) postsynaptic specialization membrane(GO:0099634) |
0.1 | 0.6 | GO:0016533 | cyclin-dependent protein kinase 5 holoenzyme complex(GO:0016533) |
0.1 | 0.6 | GO:0098833 | presynaptic endocytic zone(GO:0098833) presynaptic endocytic zone membrane(GO:0098835) extrinsic component of presynaptic membrane(GO:0098888) extrinsic component of presynaptic endocytic zone(GO:0098894) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.9 | GO:0005201 | extracellular matrix structural constituent(GO:0005201) |
0.0 | 1.3 | GO:0005184 | neuropeptide hormone activity(GO:0005184) |
0.0 | 1.3 | GO:0005245 | voltage-gated calcium channel activity(GO:0005245) |
0.2 | 1.1 | GO:0004743 | pyruvate kinase activity(GO:0004743) |
0.1 | 1.0 | GO:0030552 | cAMP binding(GO:0030552) |
0.1 | 0.9 | GO:0008048 | calcium sensitive guanylate cyclase activator activity(GO:0008048) |
0.1 | 0.9 | GO:0032041 | histone deacetylase activity (H3-K14 specific)(GO:0031078) NAD-dependent histone deacetylase activity (H3-K14 specific)(GO:0032041) |
0.0 | 0.9 | GO:0042043 | neurexin family protein binding(GO:0042043) |
0.0 | 0.7 | GO:0016628 | oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor(GO:0016628) |
0.1 | 0.6 | GO:0008046 | axon guidance receptor activity(GO:0008046) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 0.9 | PID CONE PATHWAY | Visual signal transduction: Cones |
0.0 | 0.6 | PID P38 MKK3 6PATHWAY | p38 MAPK signaling pathway |
0.0 | 0.5 | NABA COLLAGENS | Genes encoding collagen proteins |
0.0 | 0.4 | ST WNT CA2 CYCLIC GMP PATHWAY | Wnt/Ca2+/cyclic GMP signaling. |
0.0 | 0.3 | PID EPHB FWD PATHWAY | EPHB forward signaling |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.0 | REACTOME POTASSIUM CHANNELS | Genes involved in Potassium Channels |
0.0 | 0.7 | REACTOME CHOLESTEROL BIOSYNTHESIS | Genes involved in Cholesterol biosynthesis |
0.0 | 0.7 | REACTOME O LINKED GLYCOSYLATION OF MUCINS | Genes involved in O-linked glycosylation of mucins |
0.0 | 0.5 | REACTOME LIGAND GATED ION CHANNEL TRANSPORT | Genes involved in Ligand-gated ion channel transport |
0.0 | 0.5 | REACTOME COLLAGEN FORMATION | Genes involved in Collagen formation |
0.1 | 0.4 | REACTOME CREB PHOSPHORYLATION THROUGH THE ACTIVATION OF CAMKII | Genes involved in CREB phosphorylation through the activation of CaMKII |
0.0 | 0.3 | REACTOME INTERACTION BETWEEN L1 AND ANKYRINS | Genes involved in Interaction between L1 and Ankyrins |
0.0 | 0.3 | REACTOME MRNA DECAY BY 5 TO 3 EXORIBONUCLEASE | Genes involved in mRNA Decay by 5' to 3' Exoribonuclease |
0.0 | 0.2 | REACTOME ACTIVATED AMPK STIMULATES FATTY ACID OXIDATION IN MUSCLE | Genes involved in Activated AMPK stimulates fatty-acid oxidation in muscle |