PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
drgx | dr11_v1_chr13_+_30912938_30912938 | -0.49 | 3.3e-02 | Click! |
arxb | dr11_v1_chr21_-_40676224_40676224 | -0.35 | 1.4e-01 | Click! |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 17.0 | GO:0003009 | skeletal muscle contraction(GO:0003009) |
0.1 | 6.9 | GO:0046928 | regulation of neurotransmitter secretion(GO:0046928) |
0.1 | 6.0 | GO:0008045 | motor neuron axon guidance(GO:0008045) |
0.8 | 4.9 | GO:0051703 | mammillary body development(GO:0021767) social behavior(GO:0035176) intraspecies interaction between organisms(GO:0051703) |
0.3 | 3.9 | GO:0002031 | G-protein coupled receptor internalization(GO:0002031) |
1.2 | 3.7 | GO:1900620 | acetylcholine biosynthetic process(GO:0008292) acetate ester biosynthetic process(GO:1900620) |
0.2 | 3.6 | GO:0051932 | synaptic transmission, GABAergic(GO:0051932) |
0.1 | 3.5 | GO:0030282 | bone mineralization(GO:0030282) |
0.2 | 3.4 | GO:0046051 | UTP biosynthetic process(GO:0006228) UTP metabolic process(GO:0046051) |
0.1 | 3.3 | GO:0008277 | regulation of G-protein coupled receptor protein signaling pathway(GO:0008277) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 17.0 | GO:0005861 | troponin complex(GO:0005861) |
0.7 | 11.2 | GO:0031680 | G-protein beta/gamma-subunit complex(GO:0031680) |
0.3 | 6.9 | GO:0043195 | terminal bouton(GO:0043195) |
0.0 | 4.7 | GO:0043235 | receptor complex(GO:0043235) |
0.1 | 3.9 | GO:0030426 | growth cone(GO:0030426) |
0.1 | 3.7 | GO:0035869 | ciliary transition zone(GO:0035869) |
0.1 | 3.6 | GO:1902711 | GABA receptor complex(GO:1902710) GABA-A receptor complex(GO:1902711) |
0.1 | 3.2 | GO:0001917 | photoreceptor inner segment(GO:0001917) |
0.4 | 2.9 | GO:0000015 | phosphopyruvate hydratase complex(GO:0000015) |
0.1 | 2.7 | GO:0005758 | mitochondrial intermembrane space(GO:0005758) organelle envelope lumen(GO:0031970) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 11.2 | GO:0031681 | G-protein beta-subunit binding(GO:0031681) |
0.1 | 10.3 | GO:0019905 | syntaxin binding(GO:0019905) |
0.0 | 4.5 | GO:0042393 | histone binding(GO:0042393) |
0.0 | 3.9 | GO:0001664 | G-protein coupled receptor binding(GO:0001664) |
0.3 | 3.7 | GO:0016413 | O-acetyltransferase activity(GO:0016413) |
0.3 | 3.6 | GO:0022851 | benzodiazepine receptor activity(GO:0008503) GABA-gated chloride ion channel activity(GO:0022851) |
0.1 | 3.4 | GO:0004550 | nucleoside diphosphate kinase activity(GO:0004550) |
0.2 | 3.3 | GO:0015026 | coreceptor activity(GO:0015026) |
0.4 | 2.9 | GO:0004634 | phosphopyruvate hydratase activity(GO:0004634) |
0.2 | 2.9 | GO:0005080 | protein kinase C binding(GO:0005080) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 10.9 | PID RHODOPSIN PATHWAY | Visual signal transduction: Rods |
0.0 | 3.1 | PID RB 1PATHWAY | Regulation of retinoblastoma protein |
0.0 | 0.8 | PID CMYB PATHWAY | C-MYB transcription factor network |
0.0 | 0.5 | PID AVB3 OPN PATHWAY | Osteopontin-mediated events |
0.0 | 0.4 | PID A6B1 A6B4 INTEGRIN PATHWAY | a6b1 and a6b4 Integrin signaling |
0.0 | 0.3 | PID P38 GAMMA DELTA PATHWAY | Signaling mediated by p38-gamma and p38-delta |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
2.8 | 11.2 | REACTOME OLFACTORY SIGNALING PATHWAY | Genes involved in Olfactory Signaling Pathway |
0.0 | 1.7 | REACTOME TRANSPORT OF INORGANIC CATIONS ANIONS AND AMINO ACIDS OLIGOPEPTIDES | Genes involved in Transport of inorganic cations/anions and amino acids/oligopeptides |
0.1 | 1.2 | REACTOME CRMPS IN SEMA3A SIGNALING | Genes involved in CRMPs in Sema3A signaling |
0.0 | 1.0 | REACTOME POTASSIUM CHANNELS | Genes involved in Potassium Channels |
0.0 | 0.5 | REACTOME REGULATION OF SIGNALING BY CBL | Genes involved in Regulation of signaling by CBL |
0.1 | 0.4 | REACTOME ORGANIC CATION ANION ZWITTERION TRANSPORT | Genes involved in Organic cation/anion/zwitterion transport |
0.0 | 0.3 | REACTOME CREATION OF C4 AND C2 ACTIVATORS | Genes involved in Creation of C4 and C2 activators |
0.0 | 0.1 | REACTOME CHYLOMICRON MEDIATED LIPID TRANSPORT | Genes involved in Chylomicron-mediated lipid transport |