PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
e2f7 | dr11_v1_chr4_-_2545310_2545345 | 0.79 | 5.5e-05 | Click! |
e2f1 | dr11_v1_chr23_-_43486714_43486714 | 0.70 | 7.7e-04 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr20_-_29498178 Show fit | 11.50 |
ENSDART00000152986
ENSDART00000027851 ENSDART00000152954 |
ribonucleotide reductase M2 polypeptide |
|
chr14_+_14841685 Show fit | 11.11 |
ENSDART00000158291
ENSDART00000162039 |
stem-loop binding protein |
|
chr19_-_47570672 Show fit | 10.49 |
ENSDART00000112155
|
ribonucleotide reductase M2 polypeptide |
|
chr7_+_24814866 Show fit | 10.46 |
ENSDART00000173581
|
si:ch211-226l4.6 |
|
chr3_+_27027781 Show fit | 10.38 |
ENSDART00000065495
|
epithelial membrane protein 2 |
|
chr20_+_34770197 Show fit | 10.13 |
ENSDART00000018304
|
minichromosome maintenance complex component 3 |
|
chr24_+_41690545 Show fit | 9.97 |
ENSDART00000160069
|
laminin, alpha 1 |
|
chr7_+_24881680 Show fit | 9.60 |
ENSDART00000058843
|
kelch repeat-containing protein |
|
chr19_+_627899 Show fit | 9.05 |
ENSDART00000148508
|
telomerase reverse transcriptase |
|
chr21_+_30721733 Show fit | 9.00 |
ENSDART00000040443
|
zgc:110224 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 39.5 | GO:0006260 | DNA replication(GO:0006260) |
3.2 | 35.1 | GO:0006267 | pre-replicative complex assembly involved in nuclear cell cycle DNA replication(GO:0006267) pre-replicative complex assembly(GO:0036388) pre-replicative complex assembly involved in cell cycle DNA replication(GO:1902299) |
2.0 | 22.0 | GO:0009263 | deoxyribonucleotide biosynthetic process(GO:0009263) |
0.8 | 17.0 | GO:0006270 | DNA replication initiation(GO:0006270) |
0.3 | 16.1 | GO:0044744 | protein import into nucleus(GO:0006606) protein targeting to nucleus(GO:0044744) single-organism nuclear import(GO:1902593) |
3.1 | 15.4 | GO:0097510 | base-excision repair, AP site formation via deaminated base removal(GO:0097510) |
1.4 | 13.6 | GO:0007095 | mitotic G2 DNA damage checkpoint(GO:0007095) |
0.6 | 13.6 | GO:0007004 | RNA-dependent DNA biosynthetic process(GO:0006278) telomere maintenance via telomerase(GO:0007004) |
1.0 | 12.2 | GO:0000729 | DNA double-strand break processing(GO:0000729) |
0.2 | 12.2 | GO:0060216 | definitive hemopoiesis(GO:0060216) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 123.6 | GO:0005634 | nucleus(GO:0005634) |
2.3 | 41.0 | GO:0042555 | MCM complex(GO:0042555) |
0.0 | 24.0 | GO:0005654 | nucleoplasm(GO:0005654) |
0.0 | 17.3 | GO:0005829 | cytosol(GO:0005829) |
0.1 | 15.3 | GO:0090575 | RNA polymerase II transcription factor complex(GO:0090575) |
2.7 | 13.4 | GO:0005662 | DNA replication factor A complex(GO:0005662) |
4.2 | 12.7 | GO:0032301 | MutSalpha complex(GO:0032301) |
0.5 | 12.2 | GO:0035861 | site of double-strand break(GO:0035861) |
4.0 | 11.9 | GO:0031390 | Ctf18 RFC-like complex(GO:0031390) |
1.0 | 11.9 | GO:0000808 | origin recognition complex(GO:0000808) nuclear origin of replication recognition complex(GO:0005664) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 23.9 | GO:0046983 | protein dimerization activity(GO:0046983) |
3.1 | 22.0 | GO:0061731 | ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor(GO:0004748) oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor(GO:0016728) ribonucleoside-diphosphate reductase activity(GO:0061731) |
1.2 | 21.6 | GO:0003688 | DNA replication origin binding(GO:0003688) |
0.4 | 18.3 | GO:0008094 | DNA-dependent ATPase activity(GO:0008094) |
0.1 | 17.7 | GO:0042393 | histone binding(GO:0042393) |
5.1 | 15.4 | GO:0043739 | G/U mismatch-specific uracil-DNA glycosylase activity(GO:0043739) |
0.2 | 13.6 | GO:0001227 | transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001227) |
0.4 | 12.8 | GO:0003684 | damaged DNA binding(GO:0003684) |
4.2 | 12.7 | GO:0032143 | guanine/thymine mispair binding(GO:0032137) single base insertion or deletion binding(GO:0032138) single thymine insertion binding(GO:0032143) oxidized DNA binding(GO:0032356) oxidized purine DNA binding(GO:0032357) mismatch repair complex binding(GO:0032404) MutLalpha complex binding(GO:0032405) |
0.6 | 12.2 | GO:0036002 | pre-mRNA binding(GO:0036002) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.7 | 59.3 | PID E2F PATHWAY | E2F transcription factor network |
0.5 | 25.6 | PID FANCONI PATHWAY | Fanconi anemia pathway |
0.3 | 17.3 | PID TELOMERASE PATHWAY | Regulation of Telomerase |
0.1 | 11.0 | PID P53 DOWNSTREAM PATHWAY | Direct p53 effectors |
0.8 | 10.0 | PID INTEGRIN4 PATHWAY | Alpha6 beta4 integrin-ligand interactions |
0.7 | 7.8 | SA G2 AND M PHASES | Cdc25 activates the cdc2/cyclin B complex to induce the G2/M transition. |
0.1 | 7.0 | PID CMYB PATHWAY | C-MYB transcription factor network |
0.0 | 6.7 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
0.2 | 6.5 | PID DELTA NP63 PATHWAY | Validated transcriptional targets of deltaNp63 isoforms |
0.3 | 5.1 | PID ATR PATHWAY | ATR signaling pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
3.0 | 42.3 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
1.2 | 28.6 | REACTOME G1 S SPECIFIC TRANSCRIPTION | Genes involved in G1/S-Specific Transcription |
1.7 | 20.6 | REACTOME REMOVAL OF THE FLAP INTERMEDIATE FROM THE C STRAND | Genes involved in Removal of the Flap Intermediate from the C-strand |
1.0 | 13.3 | REACTOME ACTIVATION OF THE PRE REPLICATIVE COMPLEX | Genes involved in Activation of the pre-replicative complex |
1.3 | 12.1 | REACTOME REPAIR SYNTHESIS FOR GAP FILLING BY DNA POL IN TC NER | Genes involved in Repair synthesis for gap-filling by DNA polymerase in TC-NER |
0.2 | 11.8 | REACTOME METABOLISM OF NON CODING RNA | Genes involved in Metabolism of non-coding RNA |
1.0 | 11.1 | REACTOME SLBP DEPENDENT PROCESSING OF REPLICATION DEPENDENT HISTONE PRE MRNAS | Genes involved in SLBP Dependent Processing of Replication-Dependent Histone Pre-mRNAs |
1.0 | 9.1 | REACTOME EXTENSION OF TELOMERES | Genes involved in Extension of Telomeres |
0.1 | 8.6 | REACTOME L1CAM INTERACTIONS | Genes involved in L1CAM interactions |
0.7 | 7.9 | REACTOME G2 M DNA DAMAGE CHECKPOINT | Genes involved in G2/M DNA damage checkpoint |