PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
E2F2 | dr11_v1_chr17_-_27266053_27266053 | 0.93 | 9.7e-09 | Click! |
e2f5 | dr11_v1_chr2_-_31686353_31686403 | 0.14 | 5.7e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr20_+_39344889 Show fit | 20.76 |
ENSDART00000009164
|
establishment of sister chromatid cohesion N-acetyltransferase 2 |
|
chr20_+_34770197 Show fit | 20.18 |
ENSDART00000018304
|
minichromosome maintenance complex component 3 |
|
chr19_-_47571797 Show fit | 19.18 |
ENSDART00000166180
ENSDART00000168134 |
ribonucleotide reductase M2 polypeptide |
|
chr13_+_8255106 Show fit | 16.79 |
ENSDART00000080465
|
helicase, lymphoid specific |
|
chr9_-_2892250 Show fit | 15.73 |
ENSDART00000140695
|
cell division cycle associated 7a |
|
chr3_-_54607166 Show fit | 15.62 |
ENSDART00000021977
|
DNA (cytosine-5-)-methyltransferase 1 |
|
chr22_-_4439311 Show fit | 12.94 |
ENSDART00000169317
|
ubiquitin-like with PHD and ring finger domains 1 |
|
chr11_-_11792766 Show fit | 12.83 |
ENSDART00000011657
|
cell division cycle 6 homolog (S. cerevisiae) |
|
chr24_-_35561672 Show fit | 11.99 |
ENSDART00000058564
|
minichromosome maintenance complex component 4 |
|
chr4_-_2545310 Show fit | 11.87 |
ENSDART00000150619
ENSDART00000140760 |
E2F transcription factor 7 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
6.8 | 47.3 | GO:1902315 | cell cycle DNA replication initiation(GO:1902292) nuclear cell cycle DNA replication initiation(GO:1902315) mitotic DNA replication initiation(GO:1902975) |
4.3 | 47.2 | GO:0009263 | deoxyribonucleotide biosynthetic process(GO:0009263) |
4.5 | 45.3 | GO:0044030 | regulation of DNA methylation(GO:0044030) |
3.4 | 43.6 | GO:0000727 | double-strand break repair via break-induced replication(GO:0000727) |
3.0 | 41.4 | GO:0000076 | DNA replication checkpoint(GO:0000076) |
0.2 | 29.3 | GO:0006281 | DNA repair(GO:0006281) |
3.6 | 25.5 | GO:0033567 | DNA replication, Okazaki fragment processing(GO:0033567) |
0.7 | 25.4 | GO:0048538 | thymus development(GO:0048538) |
1.9 | 24.3 | GO:0006270 | DNA replication initiation(GO:0006270) |
6.9 | 20.8 | GO:0034421 | post-translational protein acetylation(GO:0034421) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 189.4 | GO:0005634 | nucleus(GO:0005634) |
4.7 | 84.5 | GO:0042555 | MCM complex(GO:0042555) |
0.3 | 81.1 | GO:0000785 | chromatin(GO:0000785) |
0.0 | 68.6 | GO:0005829 | cytosol(GO:0005829) |
0.2 | 54.1 | GO:0005730 | nucleolus(GO:0005730) |
3.3 | 36.0 | GO:0005664 | origin recognition complex(GO:0000808) nuclear origin of replication recognition complex(GO:0005664) |
0.1 | 29.7 | GO:0005694 | chromosome(GO:0005694) |
3.5 | 24.5 | GO:0031261 | DNA replication preinitiation complex(GO:0031261) |
0.0 | 24.2 | GO:0005739 | mitochondrion(GO:0005739) |
0.2 | 20.4 | GO:0090575 | RNA polymerase II transcription factor complex(GO:0090575) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
4.4 | 109.8 | GO:0003688 | DNA replication origin binding(GO:0003688) |
0.0 | 53.5 | GO:0003677 | DNA binding(GO:0003677) |
6.3 | 43.9 | GO:0016728 | ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor(GO:0004748) oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor(GO:0016728) ribonucleoside-diphosphate reductase activity(GO:0061731) |
0.2 | 40.5 | GO:0042393 | histone binding(GO:0042393) |
0.5 | 25.2 | GO:0008094 | DNA-dependent ATPase activity(GO:0008094) |
0.4 | 22.1 | GO:0031072 | heat shock protein binding(GO:0031072) |
3.0 | 20.8 | GO:0004523 | RNA-DNA hybrid ribonuclease activity(GO:0004523) |
1.6 | 20.2 | GO:0003886 | DNA (cytosine-5-)-methyltransferase activity(GO:0003886) |
1.7 | 19.8 | GO:1990404 | protein ADP-ribosylase activity(GO:1990404) |
0.1 | 19.8 | GO:0008168 | methyltransferase activity(GO:0008168) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.9 | 161.3 | PID E2F PATHWAY | E2F transcription factor network |
0.7 | 26.1 | PID ATR PATHWAY | ATR signaling pathway |
0.4 | 19.8 | PID CMYB PATHWAY | C-MYB transcription factor network |
2.2 | 17.8 | SA G2 AND M PHASES | Cdc25 activates the cdc2/cyclin B complex to induce the G2/M transition. |
0.5 | 17.5 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
0.6 | 16.9 | ST TUMOR NECROSIS FACTOR PATHWAY | Tumor Necrosis Factor Pathway. |
0.4 | 15.6 | PID RB 1PATHWAY | Regulation of retinoblastoma protein |
0.4 | 13.8 | PID AURORA B PATHWAY | Aurora B signaling |
0.3 | 12.6 | PID DELTA NP63 PATHWAY | Validated transcriptional targets of deltaNp63 isoforms |
0.3 | 12.2 | PID TELOMERASE PATHWAY | Regulation of Telomerase |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
5.7 | 79.8 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
3.4 | 67.6 | REACTOME G1 S SPECIFIC TRANSCRIPTION | Genes involved in G1/S-Specific Transcription |
4.1 | 61.6 | REACTOME CDC6 ASSOCIATION WITH THE ORC ORIGIN COMPLEX | Genes involved in CDC6 association with the ORC:origin complex |
2.8 | 25.5 | REACTOME EARLY PHASE OF HIV LIFE CYCLE | Genes involved in Early Phase of HIV Life Cycle |
1.3 | 19.9 | REACTOME ACTIVATION OF THE PRE REPLICATIVE COMPLEX | Genes involved in Activation of the pre-replicative complex |
1.6 | 17.8 | REACTOME G2 M DNA DAMAGE CHECKPOINT | Genes involved in G2/M DNA damage checkpoint |
0.8 | 16.7 | REACTOME G0 AND EARLY G1 | Genes involved in G0 and Early G1 |
0.2 | 12.5 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
0.5 | 10.8 | REACTOME KINESINS | Genes involved in Kinesins |
0.6 | 7.8 | REACTOME PACKAGING OF TELOMERE ENDS | Genes involved in Packaging Of Telomere Ends |