PRJEB1986: zebrafish developmental stages transcriptome
Gene Symbol | Gene ID | Gene Info |
---|---|---|
e2f3
|
ENSDARG00000070463 | E2F transcription factor 3 |
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
e2f3 | dr11_v1_chr19_-_29294457_29294457 | 0.87 | 1.5e-06 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr23_-_18913032 | 1.28 |
ENSDART00000136678
|
si:ch211-209j10.6
|
si:ch211-209j10.6 |
chr7_+_26534131 | 1.24 |
ENSDART00000173980
|
si:dkey-62k3.5
|
si:dkey-62k3.5 |
chr24_-_38657683 | 1.22 |
ENSDART00000154843
|
si:ch1073-164k15.3
|
si:ch1073-164k15.3 |
chr16_+_40575742 | 1.22 |
ENSDART00000161503
|
ccne2
|
cyclin E2 |
chr16_+_28728347 | 1.16 |
ENSDART00000149240
|
si:dkey-24i24.3
|
si:dkey-24i24.3 |
chr17_-_29224908 | 1.13 |
ENSDART00000156288
|
si:dkey-28g23.6
|
si:dkey-28g23.6 |
chr24_+_39108243 | 1.09 |
ENSDART00000156353
|
mss51
|
MSS51 mitochondrial translational activator |
chr4_-_9909371 | 1.08 |
ENSDART00000102656
|
si:dkey-22l11.6
|
si:dkey-22l11.6 |
chr15_-_14884332 | 1.06 |
ENSDART00000165237
|
si:ch211-24o8.4
|
si:ch211-24o8.4 |
chr16_-_21140097 | 1.05 |
ENSDART00000145837
ENSDART00000146500 |
si:dkey-271j15.3
|
si:dkey-271j15.3 |
chr6_+_7533601 | 1.01 |
ENSDART00000057823
|
pa2g4a
|
proliferation-associated 2G4, a |
chr14_-_30918662 | 1.01 |
ENSDART00000176631
|
si:ch211-126c2.4
|
si:ch211-126c2.4 |
chr9_-_2892045 | 1.00 |
ENSDART00000137201
|
cdca7a
|
cell division cycle associated 7a |
chr7_+_34236238 | 0.99 |
ENSDART00000052474
|
tipin
|
timeless interacting protein |
chr15_-_34056733 | 0.98 |
ENSDART00000170130
ENSDART00000188272 |
VWDE
|
si:dkey-30e9.7 |
chr1_-_42289704 | 0.92 |
ENSDART00000150124
|
si:ch211-71k14.1
|
si:ch211-71k14.1 |
chr25_+_186583 | 0.91 |
ENSDART00000161504
|
pclaf
|
PCNA clamp associated factor |
chr9_-_2892250 | 0.88 |
ENSDART00000140695
|
cdca7a
|
cell division cycle associated 7a |
chr3_+_38540411 | 0.87 |
ENSDART00000154943
|
si:dkey-7f16.3
|
si:dkey-7f16.3 |
chr2_-_44344321 | 0.86 |
ENSDART00000084174
|
lig1
|
ligase I, DNA, ATP-dependent |
chr8_+_23355484 | 0.85 |
ENSDART00000085361
ENSDART00000125729 |
dnmt3ba
|
DNA (cytosine-5-)-methyltransferase 3 beta, duplicate a |
chr20_+_26394324 | 0.78 |
ENSDART00000078093
|
zbtb2b
|
zinc finger and BTB domain containing 2b |
chr17_-_32779556 | 0.78 |
ENSDART00000077459
|
smyd2a
|
SET and MYND domain containing 2a |
chr14_+_22076596 | 0.78 |
ENSDART00000106147
ENSDART00000100278 ENSDART00000131489 |
slc43a1a
|
solute carrier family 43 (amino acid system L transporter), member 1a |
chr7_+_67434677 | 0.73 |
ENSDART00000165971
ENSDART00000166702 |
kars
|
lysyl-tRNA synthetase |
chr14_+_14841685 | 0.69 |
ENSDART00000158291
ENSDART00000162039 |
slbp
|
stem-loop binding protein |
chr5_+_66433287 | 0.69 |
ENSDART00000170757
|
kntc1
|
kinetochore associated 1 |
chr19_-_10214264 | 0.68 |
ENSDART00000053300
ENSDART00000148225 |
znf865
|
zinc finger protein 865 |
chr21_-_26490186 | 0.67 |
ENSDART00000009889
|
zgc:110540
|
zgc:110540 |
chr11_-_11792766 | 0.65 |
ENSDART00000011657
|
cdc6
|
cell division cycle 6 homolog (S. cerevisiae) |
chr21_-_21514176 | 0.65 |
ENSDART00000031205
|
nectin3b
|
nectin cell adhesion molecule 3b |
chr5_+_13394543 | 0.62 |
ENSDART00000051669
ENSDART00000135921 |
tctn2
|
tectonic family member 2 |
chr19_+_636886 | 0.60 |
ENSDART00000149192
|
tert
|
telomerase reverse transcriptase |
chr25_+_36339867 | 0.59 |
ENSDART00000152195
|
si:ch211-113a14.18
|
si:ch211-113a14.18 |
chr17_-_6535941 | 0.58 |
ENSDART00000109249
|
cenpo
|
centromere protein O |
chr3_-_54607166 | 0.55 |
ENSDART00000021977
|
dnmt1
|
DNA (cytosine-5-)-methyltransferase 1 |
chr23_+_43950674 | 0.55 |
ENSDART00000167813
|
corin
|
corin, serine peptidase |
chr10_+_17681074 | 0.52 |
ENSDART00000057500
|
drg1
|
developmentally regulated GTP binding protein 1 |
chr20_+_26905158 | 0.47 |
ENSDART00000138249
|
rwdd2b
|
RWD domain containing 2B |
chr1_-_9980765 | 0.41 |
ENSDART00000142906
|
si:dkeyp-75b4.7
|
si:dkeyp-75b4.7 |
chr8_-_11988065 | 0.33 |
ENSDART00000005140
|
med27
|
mediator complex subunit 27 |
chr3_-_32275975 | 0.31 |
ENSDART00000178448
|
cpt1cb
|
carnitine palmitoyltransferase 1Cb |
chr22_-_5822147 | 0.30 |
ENSDART00000011076
|
cers5
|
ceramide synthase 5 |
chr11_-_44945636 | 0.26 |
ENSDART00000157658
|
orc2
|
origin recognition complex, subunit 2 |
chr19_-_43757568 | 0.23 |
ENSDART00000058491
|
ppt1
|
palmitoyl-protein thioesterase 1 (ceroid-lipofuscinosis, neuronal 1, infantile) |
chr24_+_21684189 | 0.19 |
ENSDART00000014696
|
pdx1
|
pancreatic and duodenal homeobox 1 |
chr1_+_36722122 | 0.16 |
ENSDART00000111566
|
tmem184c
|
transmembrane protein 184C |
chr18_+_54354 | 0.16 |
ENSDART00000097163
|
zgc:158482
|
zgc:158482 |
chr18_+_34861568 | 0.15 |
ENSDART00000192825
|
LO018333.1
|
|
chr15_-_37425468 | 0.15 |
ENSDART00000059630
|
si:ch211-113j13.2
|
si:ch211-113j13.2 |
chr4_-_72100774 | 0.13 |
ENSDART00000170099
|
slco1f1
|
solute carrier organic anion transporter family, member 1F1 |
chr7_-_1101071 | 0.11 |
ENSDART00000176053
|
dctn1a
|
dynactin 1a |
chr25_+_6451038 | 0.10 |
ENSDART00000009971
|
snx33
|
sorting nexin 33 |
chr5_-_67204202 | 0.06 |
ENSDART00000145122
|
clip1a
|
CAP-GLY domain containing linker protein 1a |
chr21_+_40280027 | 0.03 |
ENSDART00000065115
|
or115-6
|
odorant receptor, family F, subfamily 115, member 6 |
chr17_+_6536152 | 0.03 |
ENSDART00000062952
ENSDART00000121789 |
slc5a6b
|
solute carrier family 5 (sodium/multivitamin and iodide cotransporter), member 6 |
chr19_+_2546775 | 0.01 |
ENSDART00000148527
ENSDART00000097528 |
sp4
|
sp4 transcription factor |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 0.6 | GO:0007571 | age-dependent general metabolic decline(GO:0007571) |
0.2 | 1.0 | GO:0043111 | replication fork arrest(GO:0043111) |
0.2 | 0.9 | GO:0051103 | DNA ligation(GO:0006266) DNA ligation involved in DNA repair(GO:0051103) |
0.1 | 0.6 | GO:0032776 | DNA methylation on cytosine(GO:0032776) |
0.1 | 0.7 | GO:0006398 | mRNA 3'-end processing by stem-loop binding and cleavage(GO:0006398) |
0.1 | 0.8 | GO:0018026 | peptidyl-lysine monomethylation(GO:0018026) |
0.1 | 0.7 | GO:0033314 | mitotic DNA replication checkpoint(GO:0033314) |
0.1 | 0.9 | GO:0019985 | translesion synthesis(GO:0019985) |
0.1 | 0.6 | GO:1904491 | protein localization to ciliary transition zone(GO:1904491) |
0.0 | 1.9 | GO:0048538 | thymus development(GO:0048538) |
0.0 | 0.6 | GO:0016584 | nucleosome positioning(GO:0016584) |
0.0 | 0.9 | GO:0006305 | DNA alkylation(GO:0006305) DNA methylation(GO:0006306) |
0.0 | 1.2 | GO:0000079 | regulation of cyclin-dependent protein serine/threonine kinase activity(GO:0000079) regulation of cyclin-dependent protein kinase activity(GO:1904029) |
0.0 | 0.7 | GO:0007286 | spermatid development(GO:0007286) |
0.0 | 0.8 | GO:0072310 | glomerular visceral epithelial cell development(GO:0072015) glomerular epithelial cell development(GO:0072310) |
0.0 | 0.3 | GO:0046549 | retinal cone cell development(GO:0046549) |
0.0 | 0.2 | GO:0002084 | protein depalmitoylation(GO:0002084) macromolecule depalmitoylation(GO:0098734) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 1.2 | GO:0097134 | cyclin E1-CDK2 complex(GO:0097134) |
0.2 | 0.6 | GO:0000333 | telomerase catalytic core complex(GO:0000333) |
0.2 | 1.0 | GO:0031298 | replication fork protection complex(GO:0031298) |
0.1 | 0.6 | GO:0031511 | Mis6-Sim4 complex(GO:0031511) |
0.0 | 0.6 | GO:0036038 | MKS complex(GO:0036038) |
0.0 | 0.3 | GO:0000808 | origin recognition complex(GO:0000808) nuclear origin of replication recognition complex(GO:0005664) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 0.9 | GO:0003910 | DNA ligase activity(GO:0003909) DNA ligase (ATP) activity(GO:0003910) |
0.2 | 0.6 | GO:0003721 | telomerase RNA reverse transcriptase activity(GO:0003721) |
0.1 | 1.4 | GO:0003886 | DNA (cytosine-5-)-methyltransferase activity(GO:0003886) |
0.1 | 0.7 | GO:0019136 | deoxynucleoside kinase activity(GO:0019136) |
0.0 | 0.8 | GO:0046975 | histone methyltransferase activity (H3-K36 specific)(GO:0046975) |
0.0 | 0.9 | GO:0003688 | DNA replication origin binding(GO:0003688) |
0.0 | 0.7 | GO:0036002 | pre-mRNA binding(GO:0036002) |
0.0 | 0.6 | GO:0031492 | nucleosomal DNA binding(GO:0031492) |
0.0 | 0.3 | GO:0050291 | sphingosine N-acyltransferase activity(GO:0050291) |
0.0 | 1.2 | GO:0016538 | cyclin-dependent protein serine/threonine kinase regulator activity(GO:0016538) |
0.0 | 0.8 | GO:0015175 | neutral amino acid transmembrane transporter activity(GO:0015175) |
0.0 | 0.2 | GO:0098599 | palmitoyl-(protein) hydrolase activity(GO:0008474) palmitoyl hydrolase activity(GO:0098599) |
0.0 | 0.2 | GO:0005324 | long-chain fatty acid transporter activity(GO:0005324) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.2 | SA REG CASCADE OF CYCLIN EXPR | Expression of cyclins regulates progression through the cell cycle by activating cyclin-dependent kinases. |
0.0 | 1.6 | PID ATR PATHWAY | ATR signaling pathway |
0.0 | 0.6 | PID IL2 PI3K PATHWAY | IL2 signaling events mediated by PI3K |
0.0 | 0.6 | PID RB 1PATHWAY | Regulation of retinoblastoma protein |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 0.9 | REACTOME EARLY PHASE OF HIV LIFE CYCLE | Genes involved in Early Phase of HIV Life Cycle |
0.1 | 0.7 | REACTOME SLBP DEPENDENT PROCESSING OF REPLICATION DEPENDENT HISTONE PRE MRNAS | Genes involved in SLBP Dependent Processing of Replication-Dependent Histone Pre-mRNAs |
0.1 | 1.9 | REACTOME G0 AND EARLY G1 | Genes involved in G0 and Early G1 |
0.0 | 0.7 | REACTOME MITOCHONDRIAL TRNA AMINOACYLATION | Genes involved in Mitochondrial tRNA aminoacylation |
0.0 | 0.6 | REACTOME DEPOSITION OF NEW CENPA CONTAINING NUCLEOSOMES AT THE CENTROMERE | Genes involved in Deposition of New CENPA-containing Nucleosomes at the Centromere |
0.0 | 0.6 | REACTOME EXTENSION OF TELOMERES | Genes involved in Extension of Telomeres |
0.0 | 0.3 | REACTOME CDC6 ASSOCIATION WITH THE ORC ORIGIN COMPLEX | Genes involved in CDC6 association with the ORC:origin complex |
0.0 | 0.3 | REACTOME SPHINGOLIPID DE NOVO BIOSYNTHESIS | Genes involved in Sphingolipid de novo biosynthesis |
0.0 | 0.7 | REACTOME MITOTIC PROMETAPHASE | Genes involved in Mitotic Prometaphase |
0.0 | 0.2 | REACTOME REGULATION OF GENE EXPRESSION IN BETA CELLS | Genes involved in Regulation of gene expression in beta cells |