PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
e2f8 | dr11_v1_chr7_-_16598212_16598212 | 0.87 | 1.7e-06 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr5_+_67390645 Show fit | 4.73 |
ENSDART00000014822
|
early B cell factor 2 |
|
chr7_+_24814866 Show fit | 4.19 |
ENSDART00000173581
|
si:ch211-226l4.6 |
|
chr13_+_46941930 Show fit | 3.91 |
ENSDART00000056962
|
F-box protein 5 |
|
chr1_-_38170997 Show fit | 3.72 |
ENSDART00000142811
|
high mobility group box 2a |
|
chr12_+_27462225 Show fit | 3.64 |
ENSDART00000105661
|
mesenchyme homeobox 1 |
|
chr3_+_25999477 Show fit | 3.55 |
ENSDART00000024316
|
minichromosome maintenance complex component 5 |
|
chr6_-_33916756 Show fit | 3.47 |
ENSDART00000137447
ENSDART00000138488 |
nuclear autoantigenic sperm protein (histone-binding) |
|
chr2_-_20599315 Show fit | 3.37 |
ENSDART00000114199
|
si:ch211-267e7.3 |
|
chr24_-_35561672 Show fit | 3.36 |
ENSDART00000058564
|
minichromosome maintenance complex component 4 |
|
chr13_+_48359573 Show fit | 3.27 |
ENSDART00000161959
ENSDART00000165311 |
mutS homolog 6 (E. coli) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 11.4 | GO:0006270 | DNA replication initiation(GO:0006270) |
0.9 | 9.7 | GO:1902299 | pre-replicative complex assembly involved in nuclear cell cycle DNA replication(GO:0006267) pre-replicative complex assembly(GO:0036388) pre-replicative complex assembly involved in cell cycle DNA replication(GO:1902299) |
2.0 | 5.9 | GO:0002566 | somatic diversification of immune receptors via somatic mutation(GO:0002566) pyrimidine dimer repair(GO:0006290) somatic hypermutation of immunoglobulin genes(GO:0016446) |
1.4 | 5.4 | GO:0034723 | DNA replication-dependent nucleosome assembly(GO:0006335) DNA replication-dependent nucleosome organization(GO:0034723) |
0.5 | 5.1 | GO:0044030 | regulation of DNA methylation(GO:0044030) |
0.1 | 4.4 | GO:0036297 | interstrand cross-link repair(GO:0036297) |
0.2 | 4.1 | GO:0008156 | negative regulation of DNA replication(GO:0008156) |
1.0 | 3.9 | GO:1904667 | negative regulation of ligase activity(GO:0051352) negative regulation of ubiquitin-protein transferase activity(GO:0051444) negative regulation of ubiquitin protein ligase activity(GO:1904667) |
0.4 | 3.6 | GO:0061056 | sclerotome development(GO:0061056) |
0.0 | 3.6 | GO:0060216 | definitive hemopoiesis(GO:0060216) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 9.7 | GO:0042555 | MCM complex(GO:0042555) |
0.6 | 7.5 | GO:0005664 | origin recognition complex(GO:0000808) nuclear origin of replication recognition complex(GO:0005664) |
2.0 | 5.9 | GO:0032301 | MutSalpha complex(GO:0032301) |
0.0 | 4.3 | GO:0031012 | extracellular matrix(GO:0031012) |
0.2 | 4.1 | GO:0000784 | telomere cap complex(GO:0000782) nuclear telomere cap complex(GO:0000783) nuclear chromosome, telomeric region(GO:0000784) |
0.0 | 4.0 | GO:0005743 | mitochondrial inner membrane(GO:0005743) |
0.0 | 3.9 | GO:0005819 | spindle(GO:0005819) |
0.5 | 3.1 | GO:0031428 | box C/D snoRNP complex(GO:0031428) |
1.0 | 3.0 | GO:0031465 | Cul4B-RING E3 ubiquitin ligase complex(GO:0031465) |
0.2 | 3.0 | GO:0035098 | ESC/E(Z) complex(GO:0035098) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 13.6 | GO:0003688 | DNA replication origin binding(GO:0003688) |
0.0 | 13.4 | GO:0046983 | protein dimerization activity(GO:0046983) |
0.1 | 11.1 | GO:0042393 | histone binding(GO:0042393) |
0.1 | 6.2 | GO:0031490 | chromatin DNA binding(GO:0031490) |
0.0 | 6.2 | GO:0004842 | ubiquitin-protein transferase activity(GO:0004842) |
2.0 | 5.9 | GO:0032143 | guanine/thymine mispair binding(GO:0032137) single base insertion or deletion binding(GO:0032138) single thymine insertion binding(GO:0032143) oxidized DNA binding(GO:0032356) oxidized purine DNA binding(GO:0032357) mismatch repair complex binding(GO:0032404) MutLalpha complex binding(GO:0032405) |
0.0 | 4.8 | GO:0003682 | chromatin binding(GO:0003682) |
0.1 | 4.2 | GO:0016675 | cytochrome-c oxidase activity(GO:0004129) heme-copper terminal oxidase activity(GO:0015002) oxidoreductase activity, acting on a heme group of donors(GO:0016675) oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor(GO:0016676) |
1.4 | 4.1 | GO:0071532 | ankyrin repeat binding(GO:0071532) |
0.2 | 3.9 | GO:0030515 | snoRNA binding(GO:0030515) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 6.3 | PID E2F PATHWAY | E2F transcription factor network |
0.1 | 4.1 | PID TELOMERASE PATHWAY | Regulation of Telomerase |
0.0 | 3.9 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
0.1 | 3.7 | PID PLK1 PATHWAY | PLK1 signaling events |
0.1 | 3.4 | PID CMYB PATHWAY | C-MYB transcription factor network |
0.1 | 2.7 | PID RHOA REG PATHWAY | Regulation of RhoA activity |
0.1 | 2.5 | PID DELTA NP63 PATHWAY | Validated transcriptional targets of deltaNp63 isoforms |
0.1 | 2.5 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
0.1 | 2.4 | PID BARD1 PATHWAY | BARD1 signaling events |
0.1 | 1.5 | PID HEDGEHOG GLI PATHWAY | Hedgehog signaling events mediated by Gli proteins |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.8 | 11.7 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
0.6 | 8.8 | REACTOME CDC6 ASSOCIATION WITH THE ORC ORIGIN COMPLEX | Genes involved in CDC6 association with the ORC:origin complex |
0.3 | 5.6 | REACTOME G1 S SPECIFIC TRANSCRIPTION | Genes involved in G1/S-Specific Transcription |
0.3 | 4.1 | REACTOME PACKAGING OF TELOMERE ENDS | Genes involved in Packaging Of Telomere Ends |
0.1 | 3.5 | REACTOME TRANSPORT OF VITAMINS NUCLEOSIDES AND RELATED MOLECULES | Genes involved in Transport of vitamins, nucleosides, and related molecules |
0.1 | 3.1 | REACTOME ASSOCIATION OF TRIC CCT WITH TARGET PROTEINS DURING BIOSYNTHESIS | Genes involved in Association of TriC/CCT with target proteins during biosynthesis |
0.0 | 2.7 | REACTOME ACTIVATION OF THE MRNA UPON BINDING OF THE CAP BINDING COMPLEX AND EIFS AND SUBSEQUENT BINDING TO 43S | Genes involved in Activation of the mRNA upon binding of the cap-binding complex and eIFs, and subsequent binding to 43S |
0.2 | 2.6 | REACTOME ACTIVATION OF THE PRE REPLICATIVE COMPLEX | Genes involved in Activation of the pre-replicative complex |
0.1 | 2.5 | REACTOME PYRIMIDINE METABOLISM | Genes involved in Pyrimidine metabolism |
0.1 | 2.4 | REACTOME FANCONI ANEMIA PATHWAY | Genes involved in Fanconi Anemia pathway |