PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
egr1 | dr11_v1_chr14_-_21336385_21336385 | 0.76 | 1.8e-04 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr25_-_207214 Show fit | 4.09 |
ENSDART00000193448
|
|
|
chr17_+_27456804 Show fit | 3.75 |
ENSDART00000017756
ENSDART00000181461 ENSDART00000180178 |
cathepsin L.1 |
|
chr2_-_22535 Show fit | 3.75 |
ENSDART00000157877
|
|
|
chr3_-_49504023 Show fit | 2.78 |
ENSDART00000168108
|
protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate a |
|
chr9_-_54001502 Show fit | 2.58 |
ENSDART00000085253
|
midline 1 |
|
chr14_+_15155684 Show fit | 2.51 |
ENSDART00000167966
|
zgc:158852 |
|
chr19_-_703898 Show fit | 2.28 |
ENSDART00000181096
ENSDART00000121462 |
solute carrier family 6 (neutral amino acid transporter), member 19a, tandem duplicate 2 |
|
chr6_-_35446110 Show fit | 2.25 |
ENSDART00000058773
|
regulator of G protein signaling 16 |
|
chr24_+_24923166 Show fit | 2.22 |
ENSDART00000065288
|
phosphate cytidylyltransferase 1, choline, beta a |
|
chr6_-_15604157 Show fit | 2.19 |
ENSDART00000141597
|
leucine rich repeat (in FLII) interacting protein 1b |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.9 | GO:0007018 | microtubule-based movement(GO:0007018) |
0.3 | 2.8 | GO:0071331 | cellular response to carbohydrate stimulus(GO:0071322) cellular response to monosaccharide stimulus(GO:0071326) cellular response to hexose stimulus(GO:0071331) cellular response to glucose stimulus(GO:0071333) |
0.1 | 2.6 | GO:1903670 | regulation of sprouting angiogenesis(GO:1903670) |
0.2 | 2.5 | GO:0033173 | calcineurin-NFAT signaling cascade(GO:0033173) |
0.0 | 2.3 | GO:0035725 | sodium ion transmembrane transport(GO:0035725) |
0.1 | 2.2 | GO:0035308 | negative regulation of dephosphorylation(GO:0035305) negative regulation of protein dephosphorylation(GO:0035308) |
0.0 | 2.1 | GO:0008654 | phospholipid biosynthetic process(GO:0008654) |
0.5 | 2.0 | GO:0010807 | regulation of synaptic vesicle priming(GO:0010807) |
0.5 | 1.9 | GO:0097112 | gamma-aminobutyric acid receptor clustering(GO:0097112) |
0.3 | 1.9 | GO:0032367 | intracellular cholesterol transport(GO:0032367) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 3.8 | GO:0005764 | lysosome(GO:0005764) |
0.0 | 3.1 | GO:0030141 | secretory granule(GO:0030141) |
0.0 | 2.9 | GO:0005871 | kinesin complex(GO:0005871) |
0.3 | 2.8 | GO:0001669 | acrosomal vesicle(GO:0001669) |
0.0 | 2.8 | GO:0099503 | secretory vesicle(GO:0099503) |
0.4 | 2.5 | GO:0005955 | calcineurin complex(GO:0005955) |
0.5 | 2.0 | GO:0070044 | synaptobrevin 2-SNAP-25-syntaxin-1a complex(GO:0070044) |
0.6 | 1.9 | GO:0060077 | inhibitory synapse(GO:0060077) |
0.2 | 1.9 | GO:0005742 | mitochondrial outer membrane translocase complex(GO:0005742) |
0.1 | 1.9 | GO:0048788 | cytoskeleton of presynaptic active zone(GO:0048788) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 3.6 | GO:0015293 | symporter activity(GO:0015293) |
0.0 | 2.9 | GO:0003777 | microtubule motor activity(GO:0003777) |
0.6 | 2.8 | GO:0004679 | AMP-activated protein kinase activity(GO:0004679) |
0.0 | 2.8 | GO:0004197 | cysteine-type endopeptidase activity(GO:0004197) |
0.4 | 2.5 | GO:0033192 | calcium-dependent protein serine/threonine phosphatase activity(GO:0004723) calmodulin-dependent protein phosphatase activity(GO:0033192) |
0.4 | 2.2 | GO:0004105 | choline-phosphate cytidylyltransferase activity(GO:0004105) |
0.1 | 2.2 | GO:0051721 | protein phosphatase 2A binding(GO:0051721) |
0.3 | 2.0 | GO:0005483 | soluble NSF attachment protein activity(GO:0005483) |
0.2 | 2.0 | GO:0016803 | ether hydrolase activity(GO:0016803) |
0.5 | 1.9 | GO:0030228 | lipoprotein particle receptor activity(GO:0030228) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.6 | PID REELIN PATHWAY | Reelin signaling pathway |
0.2 | 2.5 | PID TCR CALCIUM PATHWAY | Calcium signaling in the CD4+ TCR pathway |
0.1 | 1.3 | SA TRKA RECEPTOR | The TrkA receptor binds nerve growth factor to activate MAP kinase pathways and promote cell growth. |
0.0 | 1.1 | NABA COLLAGENS | Genes encoding collagen proteins |
0.0 | 1.0 | PID NCADHERIN PATHWAY | N-cadherin signaling events |
0.1 | 0.9 | ST ADRENERGIC | Adrenergic Pathway |
0.1 | 0.9 | ST G ALPHA S PATHWAY | G alpha s Pathway |
0.0 | 0.7 | PID INSULIN GLUCOSE PATHWAY | Insulin-mediated glucose transport |
0.0 | 0.6 | ST ERK1 ERK2 MAPK PATHWAY | ERK1/ERK2 MAPK Pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 2.6 | REACTOME PLATELET SENSITIZATION BY LDL | Genes involved in Platelet sensitization by LDL |
0.2 | 2.5 | REACTOME DARPP 32 EVENTS | Genes involved in DARPP-32 events |
0.0 | 1.7 | REACTOME TRANSPORT TO THE GOLGI AND SUBSEQUENT MODIFICATION | Genes involved in Transport to the Golgi and subsequent modification |
0.1 | 1.3 | REACTOME SOS MEDIATED SIGNALLING | Genes involved in SOS-mediated signalling |
0.1 | 1.1 | REACTOME SYNTHESIS OF PE | Genes involved in Synthesis of PE |
0.0 | 1.1 | REACTOME COLLAGEN FORMATION | Genes involved in Collagen formation |
0.0 | 0.9 | REACTOME STRIATED MUSCLE CONTRACTION | Genes involved in Striated Muscle Contraction |
0.0 | 0.7 | REACTOME GLUCOSE METABOLISM | Genes involved in Glucose metabolism |
0.0 | 0.6 | REACTOME INHIBITION OF VOLTAGE GATED CA2 CHANNELS VIA GBETA GAMMA SUBUNITS | Genes involved in Inhibition of voltage gated Ca2+ channels via Gbeta/gamma subunits |
0.0 | 0.1 | REACTOME TERMINATION OF O GLYCAN BIOSYNTHESIS | Genes involved in Termination of O-glycan biosynthesis |