PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
egr2a | dr11_v1_chr17_-_43665366_43665366 | -0.82 | 1.7e-05 | Click! |
egr2b | dr11_v1_chr12_-_8504278_8504278 | -0.69 | 1.2e-03 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr2_-_22535 Show fit | 6.35 |
ENSDART00000157877
|
|
|
chr14_+_15155684 Show fit | 5.15 |
ENSDART00000167966
|
zgc:158852 |
|
chr17_+_27456804 Show fit | 3.75 |
ENSDART00000017756
ENSDART00000181461 ENSDART00000180178 |
cathepsin L.1 |
|
chr25_+_24250247 Show fit | 3.69 |
ENSDART00000064646
|
transmembrane protein 86A |
|
chr3_-_61185746 Show fit | 3.68 |
ENSDART00000028219
|
parvalbumin 4 |
|
chr25_-_207214 Show fit | 3.19 |
ENSDART00000193448
|
|
|
chr20_-_54462551 Show fit | 3.15 |
ENSDART00000171769
ENSDART00000169692 |
Enah/Vasp-like b |
|
chr6_-_35446110 Show fit | 2.88 |
ENSDART00000058773
|
regulator of G protein signaling 16 |
|
chr8_+_34731982 Show fit | 2.81 |
ENSDART00000066050
|
4-hydroxyphenylpyruvate dioxygenase b |
|
chr11_+_7324704 Show fit | 2.77 |
ENSDART00000031937
|
DIRAS family, GTP-binding RAS-like 1a |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 4.3 | GO:0051965 | positive regulation of synapse assembly(GO:0051965) |
0.1 | 4.2 | GO:1903670 | regulation of sprouting angiogenesis(GO:1903670) |
0.1 | 3.8 | GO:0051289 | protein homotetramerization(GO:0051289) |
0.0 | 3.3 | GO:0006334 | nucleosome assembly(GO:0006334) |
0.2 | 3.2 | GO:0033173 | calcineurin-NFAT signaling cascade(GO:0033173) |
0.1 | 3.2 | GO:0019319 | hexose biosynthetic process(GO:0019319) |
0.2 | 3.1 | GO:0006002 | fructose 6-phosphate metabolic process(GO:0006002) |
0.1 | 2.9 | GO:0045773 | positive regulation of axon extension(GO:0045773) |
0.6 | 2.8 | GO:0061551 | trigeminal ganglion development(GO:0061551) |
0.5 | 2.8 | GO:0006572 | tyrosine catabolic process(GO:0006572) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 6.0 | GO:0045211 | postsynaptic membrane(GO:0045211) |
0.1 | 5.3 | GO:0030141 | secretory granule(GO:0030141) |
0.0 | 4.2 | GO:0008021 | synaptic vesicle(GO:0008021) |
0.0 | 4.2 | GO:0005764 | lysosome(GO:0005764) |
0.3 | 3.1 | GO:0044295 | axonal growth cone(GO:0044295) |
0.0 | 2.9 | GO:0043025 | neuronal cell body(GO:0043025) |
0.0 | 2.8 | GO:0000786 | nucleosome(GO:0000786) |
0.1 | 2.6 | GO:0005861 | troponin complex(GO:0005861) |
0.1 | 2.2 | GO:0043679 | axon terminus(GO:0043679) |
0.1 | 2.1 | GO:0031209 | SCAR complex(GO:0031209) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.6 | 4.7 | GO:0016803 | ether hydrolase activity(GO:0016803) |
0.0 | 3.5 | GO:0015631 | tubulin binding(GO:0015631) |
0.1 | 3.4 | GO:0004683 | calmodulin-dependent protein kinase activity(GO:0004683) |
0.3 | 3.1 | GO:0005522 | profilin binding(GO:0005522) |
0.9 | 2.8 | GO:0003868 | 4-hydroxyphenylpyruvate dioxygenase activity(GO:0003868) |
0.1 | 2.8 | GO:0019003 | GDP binding(GO:0019003) |
0.0 | 2.7 | GO:0015293 | symporter activity(GO:0015293) |
0.2 | 2.5 | GO:0051721 | protein phosphatase 2A binding(GO:0051721) |
0.1 | 2.5 | GO:0048306 | calcium-dependent protein binding(GO:0048306) |
0.0 | 2.4 | GO:0046982 | protein heterodimerization activity(GO:0046982) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.5 | ST WNT CA2 CYCLIC GMP PATHWAY | Wnt/Ca2+/cyclic GMP signaling. |
0.0 | 2.1 | NABA ECM AFFILIATED | Genes encoding proteins affiliated structurally or functionally to extracellular matrix proteins |
0.1 | 1.8 | PID TCR CALCIUM PATHWAY | Calcium signaling in the CD4+ TCR pathway |
0.1 | 1.8 | ST ADRENERGIC | Adrenergic Pathway |
0.3 | 1.6 | ST INTERFERON GAMMA PATHWAY | Interferon gamma pathway. |
0.1 | 1.5 | PID IL6 7 PATHWAY | IL6-mediated signaling events |
0.1 | 1.4 | PID RXR VDR PATHWAY | RXR and RAR heterodimerization with other nuclear receptor |
0.0 | 1.4 | PID PTP1B PATHWAY | Signaling events mediated by PTP1B |
0.0 | 1.2 | PID ERBB1 INTERNALIZATION PATHWAY | Internalization of ErbB1 |
0.0 | 1.2 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.8 | 2.5 | REACTOME CREB PHOSPHORYLATION THROUGH THE ACTIVATION OF CAMKII | Genes involved in CREB phosphorylation through the activation of CaMKII |
0.1 | 2.4 | REACTOME G PROTEIN ACTIVATION | Genes involved in G-protein activation |
0.1 | 2.3 | REACTOME AMINO ACID TRANSPORT ACROSS THE PLASMA MEMBRANE | Genes involved in Amino acid transport across the plasma membrane |
0.1 | 2.3 | REACTOME STRIATED MUSCLE CONTRACTION | Genes involved in Striated Muscle Contraction |
0.1 | 1.9 | REACTOME PIP3 ACTIVATES AKT SIGNALING | Genes involved in PIP3 activates AKT signaling |
0.1 | 1.8 | REACTOME DARPP 32 EVENTS | Genes involved in DARPP-32 events |
0.1 | 1.7 | REACTOME GLYCOGEN BREAKDOWN GLYCOGENOLYSIS | Genes involved in Glycogen breakdown (glycogenolysis) |
0.1 | 1.5 | REACTOME SYNTHESIS OF GLYCOSYLPHOSPHATIDYLINOSITOL GPI | Genes involved in Synthesis of glycosylphosphatidylinositol (GPI) |
0.1 | 1.2 | REACTOME GROWTH HORMONE RECEPTOR SIGNALING | Genes involved in Growth hormone receptor signaling |
0.0 | 1.1 | REACTOME VOLTAGE GATED POTASSIUM CHANNELS | Genes involved in Voltage gated Potassium channels |