PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
ehf | dr11_v1_chr25_+_10410620_10410620 | -0.30 | 2.2e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr11_+_8129536 Show fit | 2.26 |
ENSDART00000158112
ENSDART00000011183 |
protein kinase, cAMP-dependent, catalytic, beta a |
|
chr25_+_5015019 Show fit | 2.16 |
ENSDART00000127600
|
histone deacetylase 10 |
|
chr3_+_19665319 Show fit | 1.96 |
ENSDART00000007857
ENSDART00000193509 |
methyltransferase like 2A |
|
chr20_+_35282682 Show fit | 1.74 |
ENSDART00000187199
|
family with sequence similarity 49, member A |
|
chr7_+_19374683 Show fit | 1.67 |
ENSDART00000162700
|
small nuclear ribonucleoprotein polypeptide F |
|
chr5_-_54712159 Show fit | 1.56 |
ENSDART00000149207
|
cyclin B1 |
|
chr5_-_52010122 Show fit | 1.53 |
ENSDART00000073627
ENSDART00000163898 ENSDART00000051003 |
cyclin-dependent kinase 7 |
|
chr6_+_11990733 Show fit | 1.51 |
ENSDART00000151075
|
bromodomain adjacent to zinc finger domain, 2Ba |
|
chr16_-_55028740 Show fit | 1.47 |
ENSDART00000156368
ENSDART00000161704 |
zgc:114181 |
|
chr5_+_25084385 Show fit | 1.39 |
ENSDART00000134526
ENSDART00000111863 |
PAXX, non-homologous end joining factor |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 4.7 | GO:0046777 | protein autophosphorylation(GO:0046777) |
0.0 | 3.8 | GO:0008033 | tRNA processing(GO:0008033) |
0.0 | 2.6 | GO:0035825 | reciprocal DNA recombination(GO:0035825) |
0.1 | 2.3 | GO:0010737 | protein kinase A signaling(GO:0010737) |
0.1 | 2.1 | GO:0010499 | proteasomal ubiquitin-independent protein catabolic process(GO:0010499) |
0.0 | 1.9 | GO:0000045 | autophagosome assembly(GO:0000045) autophagosome organization(GO:1905037) |
0.1 | 1.8 | GO:0071173 | mitotic spindle assembly checkpoint(GO:0007094) spindle checkpoint(GO:0031577) negative regulation of mitotic metaphase/anaphase transition(GO:0045841) spindle assembly checkpoint(GO:0071173) mitotic spindle checkpoint(GO:0071174) |
0.1 | 1.7 | GO:0045580 | regulation of T cell differentiation(GO:0045580) |
0.1 | 1.7 | GO:0000387 | spliceosomal snRNP assembly(GO:0000387) |
0.2 | 1.6 | GO:0006465 | signal peptide processing(GO:0006465) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.2 | GO:0005840 | ribosome(GO:0005840) |
0.2 | 2.1 | GO:0019773 | proteasome core complex, alpha-subunit complex(GO:0019773) |
0.0 | 2.1 | GO:0016324 | apical plasma membrane(GO:0016324) |
0.0 | 2.0 | GO:0000776 | kinetochore(GO:0000776) |
0.1 | 1.9 | GO:0005732 | small nucleolar ribonucleoprotein complex(GO:0005732) |
0.0 | 1.8 | GO:0042579 | peroxisome(GO:0005777) microbody(GO:0042579) |
0.3 | 1.7 | GO:0097433 | dense body(GO:0097433) |
0.5 | 1.6 | GO:0097125 | cyclin B1-CDK1 complex(GO:0097125) |
0.2 | 1.5 | GO:0070419 | nonhomologous end joining complex(GO:0070419) |
0.1 | 1.5 | GO:0005675 | holo TFIIH complex(GO:0005675) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 2.6 | GO:0004032 | alditol:NADP+ 1-oxidoreductase activity(GO:0004032) |
0.2 | 2.5 | GO:0004526 | ribonuclease P activity(GO:0004526) |
0.0 | 2.5 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
0.5 | 2.3 | GO:0004679 | AMP-activated protein kinase activity(GO:0004679) |
0.5 | 2.1 | GO:0047611 | acetylspermidine deacetylase activity(GO:0047611) |
0.5 | 2.0 | GO:0016427 | tRNA (cytosine) methyltransferase activity(GO:0016427) |
0.3 | 1.7 | GO:0098973 | structural constituent of postsynaptic actin cytoskeleton(GO:0098973) |
0.0 | 1.6 | GO:0005164 | tumor necrosis factor receptor binding(GO:0005164) |
0.1 | 1.5 | GO:0016805 | dipeptidase activity(GO:0016805) |
0.1 | 1.5 | GO:0008353 | RNA polymerase II carboxy-terminal domain kinase activity(GO:0008353) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.9 | PID FOXM1 PATHWAY | FOXM1 transcription factor network |
0.1 | 2.1 | PID HDAC CLASSII PATHWAY | Signaling events mediated by HDAC Class II |
0.0 | 2.1 | PID RAC1 PATHWAY | RAC1 signaling pathway |
0.1 | 1.5 | SA G2 AND M PHASES | Cdc25 activates the cdc2/cyclin B complex to induce the G2/M transition. |
0.0 | 1.4 | PID MYC PATHWAY | C-MYC pathway |
0.0 | 1.1 | PID RB 1PATHWAY | Regulation of retinoblastoma protein |
0.0 | 0.9 | PID AURORA B PATHWAY | Aurora B signaling |
0.0 | 0.8 | PID PI3KCI PATHWAY | Class I PI3K signaling events |
0.0 | 0.8 | SIG BCR SIGNALING PATHWAY | Members of the BCR signaling pathway |
0.0 | 0.8 | PID NFAT 3PATHWAY | Role of Calcineurin-dependent NFAT signaling in lymphocytes |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 3.1 | REACTOME CYCLIN A B1 ASSOCIATED EVENTS DURING G2 M TRANSITION | Genes involved in Cyclin A/B1 associated events during G2/M transition |
0.1 | 2.9 | REACTOME AUTODEGRADATION OF CDH1 BY CDH1 APC C | Genes involved in Autodegradation of Cdh1 by Cdh1:APC/C |
0.1 | 2.5 | REACTOME RNA POL II TRANSCRIPTION PRE INITIATION AND PROMOTER OPENING | Genes involved in RNA Polymerase II Transcription Pre-Initiation And Promoter Opening |
0.1 | 2.1 | REACTOME NOTCH1 INTRACELLULAR DOMAIN REGULATES TRANSCRIPTION | Genes involved in NOTCH1 Intracellular Domain Regulates Transcription |
0.1 | 2.0 | REACTOME SYNTHESIS OF GLYCOSYLPHOSPHATIDYLINOSITOL GPI | Genes involved in Synthesis of glycosylphosphatidylinositol (GPI) |
0.1 | 2.0 | REACTOME INHIBITION OF THE PROTEOLYTIC ACTIVITY OF APC C REQUIRED FOR THE ONSET OF ANAPHASE BY MITOTIC SPINDLE CHECKPOINT COMPONENTS | Genes involved in Inhibition of the proteolytic activity of APC/C required for the onset of anaphase by mitotic spindle checkpoint components |
0.1 | 1.8 | REACTOME DEPOSITION OF NEW CENPA CONTAINING NUCLEOSOMES AT THE CENTROMERE | Genes involved in Deposition of New CENPA-containing Nucleosomes at the Centromere |
0.2 | 1.7 | REACTOME SLBP DEPENDENT PROCESSING OF REPLICATION DEPENDENT HISTONE PRE MRNAS | Genes involved in SLBP Dependent Processing of Replication-Dependent Histone Pre-mRNAs |
0.1 | 1.5 | REACTOME CS DS DEGRADATION | Genes involved in CS/DS degradation |
0.1 | 1.4 | REACTOME SYNTHESIS SECRETION AND INACTIVATION OF GLP1 | Genes involved in Synthesis, Secretion, and Inactivation of Glucagon-like Peptide-1 (GLP-1) |