PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
elf3 | dr11_v1_chr22_+_661711_661711 | -0.23 | 3.3e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr5_-_69482891 Show fit | 1.46 |
ENSDART00000109487
|
|
|
chr17_-_6730247 Show fit | 1.43 |
ENSDART00000031091
|
visinin-like 1b |
|
chr5_-_21524251 Show fit | 1.37 |
ENSDART00000176793
ENSDART00000040184 |
teneurin transmembrane protein 1 |
|
chr19_-_40192249 Show fit | 1.25 |
ENSDART00000051972
|
granulin 1 |
|
chr6_-_10233538 Show fit | 1.18 |
ENSDART00000182004
ENSDART00000149237 ENSDART00000148876 |
xin actin binding repeat containing 2a |
|
chr12_-_14551077 Show fit | 1.18 |
ENSDART00000188717
|
|
|
chr24_-_11127493 Show fit | 1.18 |
ENSDART00000144066
|
myosin VIIA and Rab interacting protein |
|
chr13_-_37210369 Show fit | 1.10 |
ENSDART00000140744
|
si:dkeyp-77c8.4 |
|
chr24_-_38113208 Show fit | 1.08 |
ENSDART00000079003
|
c-reactive protein, pentraxin-related |
|
chr11_-_141592 Show fit | 1.04 |
ENSDART00000092787
|
cyclin-dependent kinase 4 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 1.5 | GO:0070650 | actin filament bundle distribution(GO:0070650) |
0.0 | 1.5 | GO:0000381 | regulation of alternative mRNA splicing, via spliceosome(GO:0000381) |
0.0 | 1.4 | GO:0007157 | heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules(GO:0007157) |
0.0 | 1.2 | GO:0030835 | regulation of actin filament depolymerization(GO:0030834) negative regulation of actin filament depolymerization(GO:0030835) |
0.0 | 1.0 | GO:0072348 | sulfur compound transport(GO:0072348) |
0.0 | 1.0 | GO:0007193 | adenylate cyclase-inhibiting G-protein coupled receptor signaling pathway(GO:0007193) |
0.1 | 0.9 | GO:0046247 | carotene metabolic process(GO:0016119) carotene catabolic process(GO:0016121) terpene metabolic process(GO:0042214) terpene catabolic process(GO:0046247) |
0.0 | 0.9 | GO:1903670 | regulation of sprouting angiogenesis(GO:1903670) |
0.2 | 0.8 | GO:0070973 | protein localization to endoplasmic reticulum exit site(GO:0070973) |
0.0 | 0.8 | GO:0043153 | response to hydrogen peroxide(GO:0042542) entrainment of circadian clock by photoperiod(GO:0043153) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.2 | GO:0005891 | voltage-gated calcium channel complex(GO:0005891) |
0.0 | 1.2 | GO:0042383 | sarcolemma(GO:0042383) |
0.1 | 1.1 | GO:0031931 | TORC1 complex(GO:0031931) |
0.1 | 0.9 | GO:0032593 | insulin-responsive compartment(GO:0032593) |
0.0 | 0.9 | GO:0000145 | exocyst(GO:0000145) |
0.0 | 0.8 | GO:0030864 | cortical actin cytoskeleton(GO:0030864) |
0.1 | 0.7 | GO:0042622 | photoreceptor outer segment membrane(GO:0042622) |
0.1 | 0.6 | GO:0042765 | GPI-anchor transamidase complex(GO:0042765) |
0.0 | 0.6 | GO:0070971 | endoplasmic reticulum exit site(GO:0070971) |
0.0 | 0.6 | GO:0005881 | cytoplasmic microtubule(GO:0005881) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.5 | GO:0005343 | organic acid:sodium symporter activity(GO:0005343) |
0.0 | 1.2 | GO:0008331 | high voltage-gated calcium channel activity(GO:0008331) |
0.0 | 1.2 | GO:0017022 | myosin binding(GO:0017022) |
0.0 | 1.1 | GO:0015485 | cholesterol binding(GO:0015485) |
0.1 | 1.0 | GO:0008353 | RNA polymerase II carboxy-terminal domain kinase activity(GO:0008353) |
0.0 | 1.0 | GO:0003707 | steroid hormone receptor activity(GO:0003707) |
0.1 | 0.9 | GO:0010436 | beta-carotene 15,15'-monooxygenase activity(GO:0003834) carotenoid dioxygenase activity(GO:0010436) |
0.1 | 0.8 | GO:0001222 | transcription corepressor binding(GO:0001222) |
0.1 | 0.8 | GO:0047555 | 3',5'-cyclic-GMP phosphodiesterase activity(GO:0047555) |
0.0 | 0.8 | GO:0042826 | histone deacetylase binding(GO:0042826) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.8 | NABA PROTEOGLYCANS | Genes encoding proteoglycans |
0.1 | 1.8 | PID MAPK TRK PATHWAY | Trk receptor signaling mediated by the MAPK pathway |
0.0 | 1.1 | PID IL6 7 PATHWAY | IL6-mediated signaling events |
0.1 | 1.0 | SA REG CASCADE OF CYCLIN EXPR | Expression of cyclins regulates progression through the cell cycle by activating cyclin-dependent kinases. |
0.0 | 1.0 | PID LKB1 PATHWAY | LKB1 signaling events |
0.1 | 0.9 | ST IL 13 PATHWAY | Interleukin 13 (IL-13) Pathway |
0.0 | 0.6 | PID EPHB FWD PATHWAY | EPHB forward signaling |
0.0 | 0.6 | PID WNT NONCANONICAL PATHWAY | Noncanonical Wnt signaling pathway |
0.0 | 0.5 | PID INTEGRIN4 PATHWAY | Alpha6 beta4 integrin-ligand interactions |
0.0 | 0.5 | PID CD8 TCR PATHWAY | TCR signaling in naïve CD8+ T cells |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.3 | REACTOME SIGNALING BY RHO GTPASES | Genes involved in Signaling by Rho GTPases |
0.1 | 1.1 | REACTOME MTORC1 MEDIATED SIGNALLING | Genes involved in mTORC1-mediated signalling |
0.1 | 1.1 | REACTOME CREATION OF C4 AND C2 ACTIVATORS | Genes involved in Creation of C4 and C2 activators |
0.0 | 1.1 | REACTOME MEIOTIC RECOMBINATION | Genes involved in Meiotic Recombination |
0.1 | 0.9 | REACTOME DEGRADATION OF THE EXTRACELLULAR MATRIX | Genes involved in Degradation of the extracellular matrix |
0.0 | 0.8 | REACTOME POST TRANSLATIONAL MODIFICATION SYNTHESIS OF GPI ANCHORED PROTEINS | Genes involved in Post-translational modification: synthesis of GPI-anchored proteins |
0.0 | 0.8 | REACTOME NRAGE SIGNALS DEATH THROUGH JNK | Genes involved in NRAGE signals death through JNK |
0.1 | 0.7 | REACTOME REGULATION OF IFNA SIGNALING | Genes involved in Regulation of IFNA signaling |
0.0 | 0.5 | REACTOME CREB PHOSPHORYLATION THROUGH THE ACTIVATION OF RAS | Genes involved in CREB phosphorylation through the activation of Ras |
0.0 | 0.5 | REACTOME NA CL DEPENDENT NEUROTRANSMITTER TRANSPORTERS | Genes involved in Na+/Cl- dependent neurotransmitter transporters |