PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
emx3 | dr11_v1_chr14_-_26377044_26377044 | -0.86 | 1.8e-06 | Click! |
emx2 | dr11_v1_chr13_+_19322686_19322686 | -0.65 | 2.7e-03 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr12_+_34896956 Show fit | 2.92 |
ENSDART00000055415
|
peripherin 2a (retinal degeneration, slow) |
|
chr5_+_2815021 Show fit | 2.61 |
ENSDART00000020472
|
4-hydroxyphenylpyruvate dioxygenase a |
|
chr7_-_38638809 Show fit | 2.54 |
ENSDART00000144341
|
six-cysteine containing astacin protease 4 |
|
chr14_+_45675306 Show fit | 2.47 |
ENSDART00000105461
|
retinal outer segment membrane protein 1b |
|
chr7_-_38638276 Show fit | 2.30 |
ENSDART00000074463
|
six-cysteine containing astacin protease 4 |
|
chr25_+_14092871 Show fit | 2.27 |
ENSDART00000067239
|
guanylate cyclase activator 1g |
|
chr17_-_12336987 Show fit | 2.01 |
ENSDART00000172001
|
synaptosomal-associated protein, 25b |
|
chr6_+_39905021 Show fit | 2.00 |
ENSDART00000064904
|
endonuclease, polyU-specific |
|
chr25_+_31227747 Show fit | 1.93 |
ENSDART00000033872
|
troponin I type 2a (skeletal, fast), tandem duplicate 1 |
|
chr25_+_34984333 Show fit | 1.73 |
ENSDART00000154760
|
coiled-coil domain containing 136b |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 10.7 | GO:0007601 | visual perception(GO:0007601) |
0.4 | 2.6 | GO:0006572 | tyrosine catabolic process(GO:0006572) |
0.1 | 2.6 | GO:0003009 | skeletal muscle contraction(GO:0003009) |
0.1 | 2.2 | GO:0015858 | nucleoside transport(GO:0015858) nucleoside transmembrane transport(GO:1901642) |
0.1 | 2.0 | GO:0045162 | clustering of voltage-gated sodium channels(GO:0045162) |
0.0 | 1.8 | GO:0032011 | ARF protein signal transduction(GO:0032011) regulation of ARF protein signal transduction(GO:0032012) |
0.6 | 1.7 | GO:1901187 | regulation of ephrin receptor signaling pathway(GO:1901187) |
0.6 | 1.7 | GO:0097052 | L-kynurenine metabolic process(GO:0097052) L-kynurenine catabolic process(GO:0097053) |
0.1 | 1.7 | GO:2000054 | negative regulation of Wnt signaling pathway involved in dorsal/ventral axis specification(GO:2000054) |
0.0 | 1.7 | GO:0035118 | embryonic pectoral fin morphogenesis(GO:0035118) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 4.1 | GO:0005861 | troponin complex(GO:0005861) |
0.1 | 2.6 | GO:0043679 | axon terminus(GO:0043679) |
0.3 | 2.0 | GO:0070032 | synaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex(GO:0070032) |
0.0 | 2.0 | GO:0005905 | clathrin-coated pit(GO:0005905) |
0.1 | 1.6 | GO:0001917 | photoreceptor inner segment(GO:0001917) |
0.1 | 1.5 | GO:0045095 | keratin filament(GO:0045095) |
0.0 | 1.4 | GO:0045271 | mitochondrial respiratory chain complex I(GO:0005747) NADH dehydrogenase complex(GO:0030964) respiratory chain complex I(GO:0045271) |
0.1 | 1.3 | GO:0031594 | neuromuscular junction(GO:0031594) |
0.1 | 1.2 | GO:0005964 | phosphorylase kinase complex(GO:0005964) |
0.1 | 1.2 | GO:0031209 | SCAR complex(GO:0031209) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 5.1 | GO:0004222 | metalloendopeptidase activity(GO:0004222) |
0.0 | 4.0 | GO:0005212 | structural constituent of eye lens(GO:0005212) |
0.9 | 2.6 | GO:0003868 | 4-hydroxyphenylpyruvate dioxygenase activity(GO:0003868) |
0.0 | 2.5 | GO:0004521 | endoribonuclease activity(GO:0004521) |
0.3 | 2.3 | GO:0008048 | calcium sensitive guanylate cyclase activator activity(GO:0008048) |
0.0 | 2.2 | GO:0015370 | solute:sodium symporter activity(GO:0015370) |
0.1 | 1.8 | GO:0005222 | intracellular cyclic nucleotide activated cation channel activity(GO:0005221) intracellular cAMP activated cation channel activity(GO:0005222) intracellular cGMP activated cation channel activity(GO:0005223) cyclic nucleotide-gated ion channel activity(GO:0043855) |
0.3 | 1.7 | GO:0016823 | hydrolase activity, acting on acid carbon-carbon bonds(GO:0016822) hydrolase activity, acting on acid carbon-carbon bonds, in ketonic substances(GO:0016823) |
0.1 | 1.7 | GO:0046875 | ephrin receptor binding(GO:0046875) |
0.0 | 1.7 | GO:0017075 | syntaxin-1 binding(GO:0017075) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 2.0 | SA FAS SIGNALING | The TNF-type receptor Fas induces apoptosis on ligand binding. |
0.0 | 1.8 | PID DELTA NP63 PATHWAY | Validated transcriptional targets of deltaNp63 isoforms |
0.0 | 1.2 | PID EPHB FWD PATHWAY | EPHB forward signaling |
0.0 | 0.5 | PID ARF 3PATHWAY | Arf1 pathway |
0.0 | 0.5 | PID NCADHERIN PATHWAY | N-cadherin signaling events |
0.0 | 0.4 | PID THROMBIN PAR4 PATHWAY | PAR4-mediated thrombin signaling events |
0.0 | 0.4 | PID HNF3A PATHWAY | FOXA1 transcription factor network |
0.0 | 0.3 | PID HIF1A PATHWAY | Hypoxic and oxygen homeostasis regulation of HIF-1-alpha |
0.0 | 0.3 | PID RHODOPSIN PATHWAY | Visual signal transduction: Rods |
0.0 | 0.2 | PID ANTHRAX PATHWAY | Cellular roles of Anthrax toxin |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.2 | REACTOME TRANSPORT OF VITAMINS NUCLEOSIDES AND RELATED MOLECULES | Genes involved in Transport of vitamins, nucleosides, and related molecules |
0.1 | 1.7 | REACTOME TRYPTOPHAN CATABOLISM | Genes involved in Tryptophan catabolism |
0.1 | 1.5 | REACTOME SYNTHESIS AND INTERCONVERSION OF NUCLEOTIDE DI AND TRIPHOSPHATES | Genes involved in Synthesis and interconversion of nucleotide di- and triphosphates |
0.1 | 1.5 | REACTOME STRIATED MUSCLE CONTRACTION | Genes involved in Striated Muscle Contraction |
0.1 | 1.4 | REACTOME PURINE SALVAGE | Genes involved in Purine salvage |
0.0 | 1.4 | REACTOME RESPIRATORY ELECTRON TRANSPORT | Genes involved in Respiratory electron transport |
0.0 | 1.3 | REACTOME TRANSPORT OF GLUCOSE AND OTHER SUGARS BILE SALTS AND ORGANIC ACIDS METAL IONS AND AMINE COMPOUNDS | Genes involved in Transport of glucose and other sugars, bile salts and organic acids, metal ions and amine compounds |
0.1 | 0.8 | REACTOME COPI MEDIATED TRANSPORT | Genes involved in COPI Mediated Transport |
0.1 | 0.8 | REACTOME TRAFFICKING AND PROCESSING OF ENDOSOMAL TLR | Genes involved in Trafficking and processing of endosomal TLR |
0.0 | 0.8 | REACTOME LIGAND GATED ION CHANNEL TRANSPORT | Genes involved in Ligand-gated ion channel transport |