PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
en1a | dr11_v1_chr9_-_785444_785444 | 0.30 | 2.1e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr14_-_9277152 Show fit | 1.41 |
ENSDART00000189048
|
ankyrin repeat and SOCS box-containing 12b |
|
chr5_+_22459087 Show fit | 1.37 |
ENSDART00000134781
|
|
|
chr10_+_28428222 Show fit | 1.32 |
ENSDART00000135003
|
si:ch211-222e20.4 |
|
chr7_-_17297156 Show fit | 1.15 |
ENSDART00000161336
|
novel immune-type receptor 11a |
|
chr14_-_41467497 Show fit | 1.01 |
ENSDART00000181220
|
MID1 interacting protein 1, like |
|
chr7_+_55314206 Show fit | 0.91 |
ENSDART00000132852
|
cytosolic thiouridylase subunit 2 homolog (S. pombe) |
|
chr7_+_17120811 Show fit | 0.89 |
ENSDART00000147140
|
protein arginine methyltransferase 3 |
|
chr17_-_6349044 Show fit | 0.85 |
ENSDART00000081707
|
organic cation transporter 2 |
|
chr7_-_20582842 Show fit | 0.84 |
ENSDART00000169750
ENSDART00000111719 |
si:dkey-19b23.11 |
|
chr10_-_21542702 Show fit | 0.83 |
ENSDART00000146761
ENSDART00000134502 |
zgc:165539 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.2 | GO:0002377 | immunoglobulin production(GO:0002377) |
0.0 | 1.2 | GO:0071166 | ribonucleoprotein complex localization(GO:0071166) |
0.2 | 0.9 | GO:0032447 | tRNA wobble position uridine thiolation(GO:0002143) protein urmylation(GO:0032447) |
0.1 | 0.9 | GO:0018216 | peptidyl-arginine methylation(GO:0018216) |
0.1 | 0.8 | GO:0002825 | neutrophil apoptotic process(GO:0001781) regulation of T-helper 1 type immune response(GO:0002825) positive regulation of T-helper 1 type immune response(GO:0002827) negative regulation of type 2 immune response(GO:0002829) inflammatory cell apoptotic process(GO:0006925) regulation of prostaglandin biosynthetic process(GO:0031392) positive regulation of prostaglandin biosynthetic process(GO:0031394) regulation of phospholipase A2 activity(GO:0032429) interleukin-2 production(GO:0032623) regulation of interleukin-2 production(GO:0032663) positive regulation of interleukin-2 production(GO:0032743) myeloid cell apoptotic process(GO:0033028) regulation of neutrophil apoptotic process(GO:0033029) positive regulation of neutrophil apoptotic process(GO:0033031) regulation of myeloid cell apoptotic process(GO:0033032) positive regulation of myeloid cell apoptotic process(GO:0033034) T-helper 1 type immune response(GO:0042088) positive regulation of CD4-positive, alpha-beta T cell differentiation(GO:0043372) T-helper 1 cell differentiation(GO:0045063) positive regulation of T-helper cell differentiation(GO:0045624) regulation of T-helper 1 cell differentiation(GO:0045625) positive regulation of T-helper 1 cell differentiation(GO:0045627) regulation of T-helper 2 cell differentiation(GO:0045628) negative regulation of T-helper 2 cell differentiation(GO:0045629) positive regulation of fatty acid biosynthetic process(GO:0045723) positive regulation of alpha-beta T cell differentiation(GO:0046638) neutrophil clearance(GO:0097350) negative regulation of phospholipase A2 activity(GO:1900138) positive regulation of CD4-positive, alpha-beta T cell activation(GO:2000516) regulation of unsaturated fatty acid biosynthetic process(GO:2001279) positive regulation of unsaturated fatty acid biosynthetic process(GO:2001280) |
0.1 | 0.8 | GO:0021661 | rhombomere 4 development(GO:0021570) rhombomere 4 morphogenesis(GO:0021661) |
0.1 | 0.8 | GO:0001682 | tRNA 5'-leader removal(GO:0001682) |
0.1 | 0.8 | GO:0072395 | signal transduction involved in cell cycle checkpoint(GO:0072395) |
0.0 | 0.8 | GO:0043297 | apical junction assembly(GO:0043297) bicellular tight junction assembly(GO:0070830) |
0.2 | 0.7 | GO:0005991 | trehalose metabolic process(GO:0005991) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.4 | GO:0000777 | condensed chromosome kinetochore(GO:0000777) |
0.0 | 1.0 | GO:0036064 | ciliary basal body(GO:0036064) |
0.1 | 0.8 | GO:0000172 | ribonuclease MRP complex(GO:0000172) |
0.1 | 0.8 | GO:0016328 | lateral plasma membrane(GO:0016328) |
0.2 | 0.7 | GO:0000120 | RNA polymerase I transcription factor complex(GO:0000120) |
0.0 | 0.7 | GO:0010494 | cytoplasmic stress granule(GO:0010494) |
0.0 | 0.7 | GO:0022627 | cytosolic small ribosomal subunit(GO:0022627) |
0.0 | 0.7 | GO:0005643 | nuclear pore(GO:0005643) |
0.1 | 0.6 | GO:0005787 | signal peptidase complex(GO:0005787) |
0.1 | 0.6 | GO:0031262 | Ndc80 complex(GO:0031262) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 0.9 | GO:0016783 | sulfurtransferase activity(GO:0016783) |
0.1 | 0.9 | GO:0016274 | arginine N-methyltransferase activity(GO:0016273) protein-arginine N-methyltransferase activity(GO:0016274) |
0.1 | 0.8 | GO:0019834 | phospholipase A2 inhibitor activity(GO:0019834) |
0.0 | 0.8 | GO:0019003 | GDP binding(GO:0019003) |
0.2 | 0.7 | GO:0015927 | alpha,alpha-trehalase activity(GO:0004555) trehalase activity(GO:0015927) |
0.2 | 0.7 | GO:0052905 | tRNA (guanine(9)-N(1))-methyltransferase activity(GO:0052905) |
0.1 | 0.7 | GO:0003886 | DNA (cytosine-5-)-methyltransferase activity(GO:0003886) |
0.0 | 0.7 | GO:0005518 | collagen binding(GO:0005518) |
0.2 | 0.6 | GO:0004788 | thiamine diphosphokinase activity(GO:0004788) thiamine binding(GO:0030975) |
0.1 | 0.6 | GO:0043515 | kinetochore binding(GO:0043515) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.8 | PID TELOMERASE PATHWAY | Regulation of Telomerase |
0.0 | 0.7 | PID AR PATHWAY | Coregulation of Androgen receptor activity |
0.0 | 0.6 | PID AURORA B PATHWAY | Aurora B signaling |
0.0 | 0.6 | PID EPO PATHWAY | EPO signaling pathway |
0.0 | 0.4 | PID ARF6 PATHWAY | Arf6 signaling events |
0.0 | 0.3 | PID TOLL ENDOGENOUS PATHWAY | Endogenous TLR signaling |
0.0 | 0.2 | PID TCR CALCIUM PATHWAY | Calcium signaling in the CD4+ TCR pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.0 | REACTOME MITOTIC PROMETAPHASE | Genes involved in Mitotic Prometaphase |
0.1 | 1.1 | REACTOME SIGNALING BY HIPPO | Genes involved in Signaling by Hippo |
0.1 | 0.7 | REACTOME DIGESTION OF DIETARY CARBOHYDRATE | Genes involved in Digestion of dietary carbohydrate |
0.0 | 0.7 | REACTOME RNA POL I TRANSCRIPTION TERMINATION | Genes involved in RNA Polymerase I Transcription Termination |
0.1 | 0.6 | REACTOME SYNTHESIS SECRETION AND INACTIVATION OF GLP1 | Genes involved in Synthesis, Secretion, and Inactivation of Glucagon-like Peptide-1 (GLP-1) |
0.0 | 0.5 | REACTOME SYNTHESIS OF PIPS AT THE LATE ENDOSOME MEMBRANE | Genes involved in Synthesis of PIPs at the late endosome membrane |
0.0 | 0.5 | REACTOME MRNA CAPPING | Genes involved in mRNA Capping |
0.0 | 0.4 | REACTOME BIOSYNTHESIS OF THE N GLYCAN PRECURSOR DOLICHOL LIPID LINKED OLIGOSACCHARIDE LLO AND TRANSFER TO A NASCENT PROTEIN | Genes involved in Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein |
0.0 | 0.4 | REACTOME INTERFERON ALPHA BETA SIGNALING | Genes involved in Interferon alpha/beta signaling |
0.0 | 0.3 | REACTOME IKK COMPLEX RECRUITMENT MEDIATED BY RIP1 | Genes involved in IKK complex recruitment mediated by RIP1 |