PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
esr1 | dr11_v1_chr20_-_26382284_26382284 | 0.60 | 6.6e-03 | Click! |
esr2b | dr11_v1_chr13_+_37022601_37022632 | 0.52 | 2.4e-02 | Click! |
esr2a | dr11_v1_chr20_+_21583639_21583639 | 0.31 | 2.0e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr10_-_44027391 Show fit | 13.44 |
ENSDART00000145404
|
crystallin, beta B1 |
|
chr9_-_22310919 Show fit | 8.29 |
ENSDART00000108719
|
crystallin, gamma M2d10 |
|
chr15_+_19797918 Show fit | 7.13 |
ENSDART00000113314
|
si:ch211-229d2.5 |
|
chr9_-_22240052 Show fit | 6.85 |
ENSDART00000111109
|
crystallin, gamma M2d9 |
|
chr9_-_22147567 Show fit | 6.68 |
ENSDART00000110941
|
crystallin, gamma M2d14 |
|
chr9_-_22272181 Show fit | 6.36 |
ENSDART00000113174
|
crystallin, gamma M2d7 |
|
chr9_-_22188117 Show fit | 6.34 |
ENSDART00000132890
|
crystallin, gamma M2d17 |
|
chr12_-_4683325 Show fit | 6.24 |
ENSDART00000152771
|
si:ch211-255p10.3 |
|
chr9_-_22318511 Show fit | 6.21 |
ENSDART00000129295
|
crystallin, gamma M2d2 |
|
chr1_+_17676745 Show fit | 6.09 |
ENSDART00000030665
|
solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.7 | 88.1 | GO:0002088 | lens development in camera-type eye(GO:0002088) |
0.1 | 7.8 | GO:0051260 | protein homooligomerization(GO:0051260) |
0.4 | 6.2 | GO:0006825 | copper ion transport(GO:0006825) |
1.5 | 6.1 | GO:0015859 | intracellular nucleoside transport(GO:0015859) purine nucleoside transmembrane transport(GO:0015860) purine nucleotide transport(GO:0015865) ATP transport(GO:0015867) purine ribonucleotide transport(GO:0015868) adenine nucleotide transport(GO:0051503) mitochondrial ATP transmembrane transport(GO:1990544) |
0.1 | 5.2 | GO:0007602 | phototransduction(GO:0007602) |
0.2 | 5.1 | GO:0048791 | calcium ion-regulated exocytosis of neurotransmitter(GO:0048791) |
0.2 | 5.1 | GO:0035845 | photoreceptor cell outer segment organization(GO:0035845) |
1.2 | 4.9 | GO:0015803 | branched-chain amino acid transport(GO:0015803) leucine transport(GO:0015820) |
0.1 | 4.9 | GO:0000381 | regulation of alternative mRNA splicing, via spliceosome(GO:0000381) |
0.4 | 4.0 | GO:0055129 | proline biosynthetic process(GO:0006561) L-proline biosynthetic process(GO:0055129) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 17.2 | GO:0005834 | heterotrimeric G-protein complex(GO:0005834) |
0.2 | 7.4 | GO:0001750 | photoreceptor outer segment(GO:0001750) |
0.2 | 7.3 | GO:0043204 | perikaryon(GO:0043204) |
0.0 | 7.2 | GO:0030424 | axon(GO:0030424) |
0.1 | 6.2 | GO:0031970 | mitochondrial intermembrane space(GO:0005758) organelle envelope lumen(GO:0031970) |
0.0 | 5.9 | GO:0009986 | cell surface(GO:0009986) |
0.1 | 5.7 | GO:0008076 | voltage-gated potassium channel complex(GO:0008076) potassium channel complex(GO:0034705) |
0.1 | 5.4 | GO:0048786 | presynaptic active zone(GO:0048786) |
0.0 | 5.1 | GO:0031012 | extracellular matrix(GO:0031012) |
0.0 | 5.0 | GO:0005743 | mitochondrial inner membrane(GO:0005743) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.0 | 87.0 | GO:0005212 | structural constituent of eye lens(GO:0005212) |
0.8 | 11.7 | GO:0031682 | G-protein gamma-subunit binding(GO:0031682) |
0.1 | 9.3 | GO:0005201 | extracellular matrix structural constituent(GO:0005201) |
0.2 | 8.2 | GO:0005184 | neuropeptide hormone activity(GO:0005184) |
0.0 | 7.4 | GO:0008017 | microtubule binding(GO:0008017) |
0.7 | 7.0 | GO:0016936 | galactoside binding(GO:0016936) |
0.2 | 6.9 | GO:0017075 | syntaxin-1 binding(GO:0017075) |
0.1 | 6.8 | GO:0001786 | phosphatidylserine binding(GO:0001786) |
0.0 | 6.4 | GO:0015293 | symporter activity(GO:0015293) |
1.2 | 6.2 | GO:0016531 | copper chaperone activity(GO:0016531) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 5.7 | NABA ECM AFFILIATED | Genes encoding proteins affiliated structurally or functionally to extracellular matrix proteins |
0.1 | 5.6 | NABA COLLAGENS | Genes encoding collagen proteins |
0.2 | 3.2 | PID INTEGRIN A4B1 PATHWAY | Alpha4 beta1 integrin signaling events |
0.2 | 3.1 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
0.1 | 3.0 | PID AP1 PATHWAY | AP-1 transcription factor network |
0.0 | 2.6 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
0.1 | 2.1 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
0.0 | 2.1 | PID NOTCH PATHWAY | Notch signaling pathway |
0.0 | 2.1 | PID TRKR PATHWAY | Neurotrophic factor-mediated Trk receptor signaling |
0.1 | 1.8 | PID SYNDECAN 3 PATHWAY | Syndecan-3-mediated signaling events |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 7.4 | REACTOME VOLTAGE GATED POTASSIUM CHANNELS | Genes involved in Voltage gated Potassium channels |
0.2 | 6.7 | REACTOME REGULATION OF INSULIN SECRETION | Genes involved in Regulation of Insulin Secretion |
0.3 | 5.8 | REACTOME PROSTACYCLIN SIGNALLING THROUGH PROSTACYCLIN RECEPTOR | Genes involved in Prostacyclin signalling through prostacyclin receptor |
0.1 | 4.8 | REACTOME COLLAGEN FORMATION | Genes involved in Collagen formation |
0.1 | 4.1 | REACTOME RESPIRATORY ELECTRON TRANSPORT | Genes involved in Respiratory electron transport |
0.1 | 4.0 | REACTOME STRIATED MUSCLE CONTRACTION | Genes involved in Striated Muscle Contraction |
0.2 | 2.9 | REACTOME GLUCAGON SIGNALING IN METABOLIC REGULATION | Genes involved in Glucagon signaling in metabolic regulation |
0.1 | 2.8 | REACTOME YAP1 AND WWTR1 TAZ STIMULATED GENE EXPRESSION | Genes involved in YAP1- and WWTR1 (TAZ)-stimulated gene expression |
0.4 | 2.7 | REACTOME CIRCADIAN REPRESSION OF EXPRESSION BY REV ERBA | Genes involved in Circadian Repression of Expression by REV-ERBA |
0.2 | 2.6 | REACTOME GABA SYNTHESIS RELEASE REUPTAKE AND DEGRADATION | Genes involved in GABA synthesis, release, reuptake and degradation |