PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
ets2 | dr11_v1_chr10_+_187760_187764 | -0.21 | 4.0e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr23_+_32335871 Show fit | 1.25 |
ENSDART00000149698
|
solute carrier family 39 (zinc transporter), member 5 |
|
chr11_+_8129536 Show fit | 1.21 |
ENSDART00000158112
ENSDART00000011183 |
protein kinase, cAMP-dependent, catalytic, beta a |
|
chr12_-_48312647 Show fit | 1.10 |
ENSDART00000114415
|
activating signal cointegrator 1 complex subunit 1 |
|
chr25_+_5015019 Show fit | 1.05 |
ENSDART00000127600
|
histone deacetylase 10 |
|
chr17_-_24890843 Show fit | 1.02 |
ENSDART00000184984
ENSDART00000135569 ENSDART00000193661 |
UDP-galactose-4-epimerase |
|
chr1_-_59571758 Show fit | 1.01 |
ENSDART00000193546
ENSDART00000167087 |
WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 1 |
|
chr7_+_19374683 Show fit | 1.01 |
ENSDART00000162700
|
small nuclear ribonucleoprotein polypeptide F |
|
chr3_+_19665319 Show fit | 0.98 |
ENSDART00000007857
ENSDART00000193509 |
methyltransferase like 2A |
|
chr3_-_45777226 Show fit | 0.94 |
ENSDART00000192849
|
H3 histone, family 3B.1 |
|
chr14_-_41478265 Show fit | 0.89 |
ENSDART00000149886
ENSDART00000016002 |
tetraspanin 7 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 4.7 | GO:0000387 | spliceosomal snRNP assembly(GO:0000387) |
0.1 | 1.9 | GO:0007094 | mitotic spindle assembly checkpoint(GO:0007094) spindle checkpoint(GO:0031577) negative regulation of mitotic metaphase/anaphase transition(GO:0045841) spindle assembly checkpoint(GO:0071173) mitotic spindle checkpoint(GO:0071174) |
0.1 | 1.8 | GO:0043248 | proteasome assembly(GO:0043248) |
0.0 | 1.6 | GO:0010466 | negative regulation of peptidase activity(GO:0010466) |
0.0 | 1.5 | GO:0008033 | tRNA processing(GO:0008033) |
0.1 | 1.3 | GO:0061055 | myotome development(GO:0061055) |
0.2 | 1.2 | GO:0019262 | N-acetylneuraminate catabolic process(GO:0019262) |
0.2 | 1.2 | GO:0071578 | zinc II ion transmembrane import(GO:0071578) |
0.1 | 1.2 | GO:0010737 | protein kinase A signaling(GO:0010737) |
0.0 | 1.2 | GO:0010499 | proteasomal ubiquitin-independent protein catabolic process(GO:0010499) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.7 | GO:0000776 | kinetochore(GO:0000776) |
0.3 | 2.2 | GO:0034719 | SMN-Sm protein complex(GO:0034719) |
0.1 | 1.6 | GO:0008541 | proteasome regulatory particle, lid subcomplex(GO:0008541) |
0.1 | 1.3 | GO:0005682 | U5 snRNP(GO:0005682) |
0.1 | 1.2 | GO:0019773 | proteasome core complex, alpha-subunit complex(GO:0019773) |
0.1 | 1.2 | GO:0000314 | organellar small ribosomal subunit(GO:0000314) mitochondrial small ribosomal subunit(GO:0005763) |
0.1 | 1.0 | GO:0005688 | U6 snRNP(GO:0005688) |
0.1 | 1.0 | GO:0005685 | U1 snRNP(GO:0005685) |
0.0 | 1.0 | GO:0000118 | histone deacetylase complex(GO:0000118) |
0.2 | 0.8 | GO:0005787 | signal peptidase complex(GO:0005787) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.4 | GO:0097602 | cullin family protein binding(GO:0097602) |
0.2 | 1.2 | GO:0004679 | AMP-activated protein kinase activity(GO:0004679) |
0.0 | 1.2 | GO:0005200 | structural constituent of cytoskeleton(GO:0005200) |
0.3 | 1.1 | GO:0047611 | acetylspermidine deacetylase activity(GO:0047611) |
0.2 | 1.1 | GO:0061133 | endopeptidase activator activity(GO:0061133) |
0.0 | 1.1 | GO:0005385 | zinc ion transmembrane transporter activity(GO:0005385) |
0.0 | 1.1 | GO:0016790 | thiolester hydrolase activity(GO:0016790) |
0.3 | 1.0 | GO:0003978 | UDP-glucose 4-epimerase activity(GO:0003978) |
0.2 | 1.0 | GO:0016427 | tRNA (cytosine) methyltransferase activity(GO:0016427) |
0.2 | 1.0 | GO:0004032 | alditol:NADP+ 1-oxidoreductase activity(GO:0004032) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.3 | PID PLK1 PATHWAY | PLK1 signaling events |
0.0 | 1.1 | PID HDAC CLASSII PATHWAY | Signaling events mediated by HDAC Class II |
0.0 | 1.0 | PID DELTA NP63 PATHWAY | Validated transcriptional targets of deltaNp63 isoforms |
0.1 | 0.7 | PID THROMBIN PAR4 PATHWAY | PAR4-mediated thrombin signaling events |
0.0 | 0.7 | PID HIF2PATHWAY | HIF-2-alpha transcription factor network |
0.0 | 0.7 | PID ATR PATHWAY | ATR signaling pathway |
0.0 | 0.7 | PID RAC1 PATHWAY | RAC1 signaling pathway |
0.0 | 0.5 | PID ALK2 PATHWAY | ALK2 signaling events |
0.0 | 0.5 | PID PI3KCI PATHWAY | Class I PI3K signaling events |
0.0 | 0.5 | PID P73PATHWAY | p73 transcription factor network |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 3.2 | REACTOME MRNA SPLICING MINOR PATHWAY | Genes involved in mRNA Splicing - Minor Pathway |
0.1 | 2.3 | REACTOME AUTODEGRADATION OF CDH1 BY CDH1 APC C | Genes involved in Autodegradation of Cdh1 by Cdh1:APC/C |
0.2 | 1.9 | REACTOME SLBP DEPENDENT PROCESSING OF REPLICATION DEPENDENT HISTONE PRE MRNAS | Genes involved in SLBP Dependent Processing of Replication-Dependent Histone Pre-mRNAs |
0.1 | 1.5 | REACTOME INHIBITION OF THE PROTEOLYTIC ACTIVITY OF APC C REQUIRED FOR THE ONSET OF ANAPHASE BY MITOTIC SPINDLE CHECKPOINT COMPONENTS | Genes involved in Inhibition of the proteolytic activity of APC/C required for the onset of anaphase by mitotic spindle checkpoint components |
0.1 | 1.3 | REACTOME ZINC TRANSPORTERS | Genes involved in Zinc transporters |
0.1 | 1.1 | REACTOME RNA POL I TRANSCRIPTION TERMINATION | Genes involved in RNA Polymerase I Transcription Termination |
0.0 | 1.1 | REACTOME NOTCH1 INTRACELLULAR DOMAIN REGULATES TRANSCRIPTION | Genes involved in NOTCH1 Intracellular Domain Regulates Transcription |
0.1 | 1.0 | REACTOME RECRUITMENT OF NUMA TO MITOTIC CENTROSOMES | Genes involved in Recruitment of NuMA to mitotic centrosomes |
0.0 | 0.9 | REACTOME METABOLISM OF VITAMINS AND COFACTORS | Genes involved in Metabolism of vitamins and cofactors |
0.1 | 0.8 | REACTOME SYNTHESIS SECRETION AND INACTIVATION OF GLP1 | Genes involved in Synthesis, Secretion, and Inactivation of Glucagon-like Peptide-1 (GLP-1) |