PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
etv7 | dr11_v1_chr23_-_5101847_5101847 | -0.49 | 3.5e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr23_+_32101361 Show fit | 2.62 |
ENSDART00000138849
|
zgc:56699 |
|
chr23_+_32101202 Show fit | 2.60 |
ENSDART00000000992
|
zgc:56699 |
|
chr20_-_37820939 Show fit | 2.14 |
ENSDART00000032978
|
NSL1, MIS12 kinetochore complex component |
|
chr20_+_39344889 Show fit | 1.94 |
ENSDART00000009164
|
establishment of sister chromatid cohesion N-acetyltransferase 2 |
|
chr17_-_51121525 Show fit | 1.78 |
ENSDART00000130412
ENSDART00000013418 |
aquarius intron-binding spliceosomal factor |
|
chr5_+_28497956 Show fit | 1.59 |
ENSDART00000191935
|
notochord formation related |
|
chr13_-_4979029 Show fit | 1.59 |
ENSDART00000132931
|
nucleolar and coiled-body phosphoprotein 1 |
|
chr13_-_33700461 Show fit | 1.59 |
ENSDART00000160520
|
MAD2L1 binding protein |
|
chr6_+_60125033 Show fit | 1.53 |
ENSDART00000148557
ENSDART00000008224 |
aurora kinase A |
|
chr13_+_5978809 Show fit | 1.53 |
ENSDART00000102563
ENSDART00000121598 |
PHD finger protein 10 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 5.2 | GO:0007283 | spermatogenesis(GO:0007283) |
0.2 | 2.8 | GO:0007096 | regulation of exit from mitosis(GO:0007096) |
0.2 | 2.1 | GO:0007220 | Notch receptor processing(GO:0007220) |
0.0 | 2.1 | GO:0000070 | mitotic sister chromatid segregation(GO:0000070) |
0.6 | 1.9 | GO:0034421 | post-translational protein acetylation(GO:0034421) |
0.5 | 1.5 | GO:0000212 | meiotic spindle organization(GO:0000212) |
0.0 | 1.5 | GO:0006913 | nucleocytoplasmic transport(GO:0006913) nuclear transport(GO:0051169) |
0.3 | 1.2 | GO:1990167 | protein K27-linked deubiquitination(GO:1990167) |
0.2 | 1.2 | GO:0000393 | spliceosomal conformational changes to generate catalytic conformation(GO:0000393) |
0.1 | 1.2 | GO:0048312 | intracellular distribution of mitochondria(GO:0048312) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 3.5 | GO:0005730 | nucleolus(GO:0005730) |
0.4 | 2.1 | GO:0000444 | MIS12/MIND type complex(GO:0000444) |
0.3 | 2.1 | GO:0070765 | gamma-secretase complex(GO:0070765) |
0.1 | 1.8 | GO:0046540 | U4/U6 x U5 tri-snRNP complex(GO:0046540) |
0.0 | 1.8 | GO:0071013 | catalytic step 2 spliceosome(GO:0071013) |
0.3 | 1.5 | GO:0032133 | chromosome passenger complex(GO:0032133) |
0.1 | 1.5 | GO:0071564 | npBAF complex(GO:0071564) |
0.3 | 1.3 | GO:0097134 | cyclin E1-CDK2 complex(GO:0097134) |
0.4 | 1.2 | GO:0043614 | multi-eIF complex(GO:0043614) |
0.0 | 1.2 | GO:0005681 | spliceosomal complex(GO:0005681) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.7 | GO:0042393 | histone binding(GO:0042393) |
0.2 | 2.4 | GO:0004724 | magnesium-dependent protein serine/threonine phosphatase activity(GO:0004724) |
0.0 | 2.1 | GO:0043022 | ribosome binding(GO:0043022) |
0.0 | 1.9 | GO:0004386 | helicase activity(GO:0004386) |
0.2 | 1.5 | GO:0035173 | histone kinase activity(GO:0035173) |
0.1 | 1.2 | GO:0019911 | structural constituent of myelin sheath(GO:0019911) |
0.0 | 1.2 | GO:0003725 | double-stranded RNA binding(GO:0003725) |
0.0 | 1.2 | GO:0016538 | cyclin-dependent protein serine/threonine kinase regulator activity(GO:0016538) |
0.3 | 1.1 | GO:0051377 | mannose-ethanolamine phosphotransferase activity(GO:0051377) |
0.2 | 1.0 | GO:0016744 | transferase activity, transferring aldehyde or ketonic groups(GO:0016744) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.1 | PID SYNDECAN 3 PATHWAY | Syndecan-3-mediated signaling events |
0.1 | 1.5 | PID AURORA A PATHWAY | Aurora A signaling |
0.0 | 1.3 | PID PRL SIGNALING EVENTS PATHWAY | Signaling events mediated by PRL |
0.0 | 1.2 | SIG PIP3 SIGNALING IN CARDIAC MYOCTES | Genes related to PIP3 signaling in cardiac myocytes |
0.0 | 1.2 | PID ERA GENOMIC PATHWAY | Validated nuclear estrogen receptor alpha network |
0.0 | 0.8 | PID BETA CATENIN NUC PATHWAY | Regulation of nuclear beta catenin signaling and target gene transcription |
0.0 | 0.7 | PID RETINOIC ACID PATHWAY | Retinoic acid receptors-mediated signaling |
0.0 | 0.7 | PID ANGIOPOIETIN RECEPTOR PATHWAY | Angiopoietin receptor Tie2-mediated signaling |
0.0 | 0.6 | PID RXR VDR PATHWAY | RXR and RAR heterodimerization with other nuclear receptor |
0.0 | 0.5 | PID VEGFR1 2 PATHWAY | Signaling events mediated by VEGFR1 and VEGFR2 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 2.1 | REACTOME SIGNALING BY NOTCH4 | Genes involved in Signaling by NOTCH4 |
0.1 | 2.1 | REACTOME MRNA SPLICING MINOR PATHWAY | Genes involved in mRNA Splicing - Minor Pathway |
0.0 | 2.1 | REACTOME MITOTIC PROMETAPHASE | Genes involved in Mitotic Prometaphase |
0.0 | 1.6 | REACTOME PPARA ACTIVATES GENE EXPRESSION | Genes involved in PPARA Activates Gene Expression |
0.0 | 1.5 | REACTOME APC C CDH1 MEDIATED DEGRADATION OF CDC20 AND OTHER APC C CDH1 TARGETED PROTEINS IN LATE MITOSIS EARLY G1 | Genes involved in APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1 |
0.0 | 1.5 | REACTOME ANTIGEN PROCESSING UBIQUITINATION PROTEASOME DEGRADATION | Genes involved in Antigen processing: Ubiquitination & Proteasome degradation |
0.1 | 1.3 | REACTOME G1 S SPECIFIC TRANSCRIPTION | Genes involved in G1/S-Specific Transcription |
0.0 | 1.2 | REACTOME REGULATION OF MRNA STABILITY BY PROTEINS THAT BIND AU RICH ELEMENTS | Genes involved in Regulation of mRNA Stability by Proteins that Bind AU-rich Elements |
0.1 | 1.1 | REACTOME INHIBITION OF REPLICATION INITIATION OF DAMAGED DNA BY RB1 E2F1 | Genes involved in Inhibition of replication initiation of damaged DNA by RB1/E2F1 |
0.1 | 1.1 | REACTOME SYNTHESIS OF GLYCOSYLPHOSPHATIDYLINOSITOL GPI | Genes involved in Synthesis of glycosylphosphatidylinositol (GPI) |