PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
evx1 | dr11_v1_chr19_-_19871211_19871211 | -0.78 | 7.8e-05 | Click! |
eve1 | dr11_v1_chr3_-_23643751_23643830 | -0.49 | 3.4e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr10_-_11385155 Show fit | 4.26 |
ENSDART00000064214
|
placenta-specific 8, tandem duplicate 1 |
|
chr19_+_40856534 Show fit | 3.83 |
ENSDART00000051950
|
guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1 |
|
chr18_+_1837668 Show fit | 3.68 |
ENSDART00000164210
|
|
|
chr19_+_40856807 Show fit | 3.38 |
ENSDART00000139083
|
guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1 |
|
chr3_-_31079186 Show fit | 2.84 |
ENSDART00000145636
ENSDART00000140569 |
elongin B elongin B |
|
chr8_-_21372446 Show fit | 2.46 |
ENSDART00000061481
ENSDART00000079293 |
elastase 2 like |
|
chr4_+_11384891 Show fit | 2.35 |
ENSDART00000092381
ENSDART00000186577 ENSDART00000191054 ENSDART00000191584 |
piccolo presynaptic cytomatrix protein a |
|
chr16_-_54455573 Show fit | 2.22 |
ENSDART00000075275
|
pyruvate kinase L/R |
|
chr23_+_40460333 Show fit | 2.05 |
ENSDART00000184658
|
SOGA family member 3b |
|
chr8_+_53423408 Show fit | 2.02 |
ENSDART00000164792
|
calcium channel, voltage-dependent, L type, alpha 1D subunit, b |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 4.1 | GO:1904071 | presynaptic active zone assembly(GO:1904071) |
0.1 | 2.8 | GO:0006368 | transcription elongation from RNA polymerase II promoter(GO:0006368) |
0.3 | 2.5 | GO:0061075 | positive regulation of neural retina development(GO:0061075) positive regulation of retina development in camera-type eye(GO:1902868) |
0.1 | 2.2 | GO:0055064 | chloride ion homeostasis(GO:0055064) |
0.0 | 2.2 | GO:0032869 | cellular response to insulin stimulus(GO:0032869) |
0.2 | 2.0 | GO:0042044 | fluid transport(GO:0042044) |
0.0 | 2.0 | GO:0010506 | regulation of autophagy(GO:0010506) |
0.6 | 1.8 | GO:0070314 | G1 to G0 transition(GO:0070314) |
0.4 | 1.6 | GO:0016123 | tetraterpenoid metabolic process(GO:0016108) tetraterpenoid biosynthetic process(GO:0016109) carotenoid metabolic process(GO:0016116) carotenoid biosynthetic process(GO:0016117) xanthophyll metabolic process(GO:0016122) xanthophyll biosynthetic process(GO:0016123) zeaxanthin metabolic process(GO:1901825) zeaxanthin biosynthetic process(GO:1901827) |
0.3 | 1.4 | GO:0051503 | intracellular nucleoside transport(GO:0015859) purine nucleoside transmembrane transport(GO:0015860) purine nucleotide transport(GO:0015865) ATP transport(GO:0015867) purine ribonucleotide transport(GO:0015868) adenine nucleotide transport(GO:0051503) mitochondrial ATP transmembrane transport(GO:1990544) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 7.2 | GO:0031680 | G-protein beta/gamma-subunit complex(GO:0031680) |
0.4 | 4.1 | GO:0098982 | GABA-ergic synapse(GO:0098982) |
0.1 | 3.8 | GO:0005891 | voltage-gated calcium channel complex(GO:0005891) |
0.0 | 3.4 | GO:0005743 | mitochondrial inner membrane(GO:0005743) |
0.5 | 2.8 | GO:0030891 | VCB complex(GO:0030891) |
0.0 | 2.0 | GO:0042383 | sarcolemma(GO:0042383) |
0.0 | 1.8 | GO:0016324 | apical plasma membrane(GO:0016324) |
0.0 | 1.5 | GO:0005905 | clathrin-coated pit(GO:0005905) |
0.1 | 1.0 | GO:0005943 | phosphatidylinositol 3-kinase complex, class IA(GO:0005943) |
0.0 | 1.0 | GO:0032588 | trans-Golgi network membrane(GO:0032588) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 7.2 | GO:0031681 | G-protein beta-subunit binding(GO:0031681) |
0.2 | 4.1 | GO:0098882 | structural constituent of presynaptic active zone(GO:0098882) |
0.1 | 3.0 | GO:0008331 | high voltage-gated calcium channel activity(GO:0008331) |
0.4 | 2.2 | GO:0004743 | pyruvate kinase activity(GO:0004743) |
0.2 | 2.0 | GO:0005432 | calcium:sodium antiporter activity(GO:0005432) |
0.1 | 1.9 | GO:0015377 | cation:chloride symporter activity(GO:0015377) potassium:chloride symporter activity(GO:0015379) |
0.2 | 1.7 | GO:0008048 | calcium sensitive guanylate cyclase activator activity(GO:0008048) |
0.4 | 1.6 | GO:0050251 | retinol isomerase activity(GO:0050251) all-trans-retinyl-ester hydrolase, 11-cis retinol forming activity(GO:0052885) |
0.0 | 1.6 | GO:0015020 | glucuronosyltransferase activity(GO:0015020) |
0.3 | 1.4 | GO:0005471 | ATP:ADP antiporter activity(GO:0005471) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 9.1 | PID RHODOPSIN PATHWAY | Visual signal transduction: Rods |
0.1 | 2.2 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
0.0 | 1.5 | PID EPHB FWD PATHWAY | EPHB forward signaling |
0.0 | 1.1 | NABA COLLAGENS | Genes encoding collagen proteins |
0.0 | 1.1 | PID AR PATHWAY | Coregulation of Androgen receptor activity |
0.0 | 0.7 | PID TGFBR PATHWAY | TGF-beta receptor signaling |
0.0 | 0.2 | PID IL23 PATHWAY | IL23-mediated signaling events |
0.0 | 0.2 | PID WNT NONCANONICAL PATHWAY | Noncanonical Wnt signaling pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.8 | 7.2 | REACTOME OLFACTORY SIGNALING PATHWAY | Genes involved in Olfactory Signaling Pathway |
0.1 | 2.0 | REACTOME REGULATION OF GENE EXPRESSION IN BETA CELLS | Genes involved in Regulation of gene expression in beta cells |
0.0 | 1.5 | REACTOME NRAGE SIGNALS DEATH THROUGH JNK | Genes involved in NRAGE signals death through JNK |
0.1 | 1.4 | REACTOME NA CL DEPENDENT NEUROTRANSMITTER TRANSPORTERS | Genes involved in Na+/Cl- dependent neurotransmitter transporters |
0.0 | 1.4 | REACTOME INTERACTIONS OF VPR WITH HOST CELLULAR PROTEINS | Genes involved in Interactions of Vpr with host cellular proteins |
0.2 | 1.3 | REACTOME SEROTONIN RECEPTORS | Genes involved in Serotonin receptors |
0.0 | 1.1 | REACTOME MYOGENESIS | Genes involved in Myogenesis |
0.0 | 1.1 | REACTOME COLLAGEN FORMATION | Genes involved in Collagen formation |
0.1 | 0.9 | REACTOME MRNA DECAY BY 5 TO 3 EXORIBONUCLEASE | Genes involved in mRNA Decay by 5' to 3' Exoribonuclease |
0.1 | 0.7 | REACTOME TERMINATION OF O GLYCAN BIOSYNTHESIS | Genes involved in Termination of O-glycan biosynthesis |