PRJEB1986: zebrafish developmental stages transcriptome
Gene Symbol | Gene ID | Gene Info |
---|---|---|
ENSDARG00000009242 | FEV transcription factor, ETS family member | |
ENSDARG00000054632 | Fli-1 proto-oncogene, ETS transcription factor a | |
ENSDARG00000077304 | ETS transcription factor ERG | |
ENSDARG00000053868 | ETS variant transcription factor 2 |
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
etv2 | dr11_v1_chr16_-_42013858_42013858 | -0.50 | 2.8e-02 | Click! |
fli1a | dr11_v1_chr18_+_48428713_48428713 | -0.47 | 4.3e-02 | Click! |
fev | dr11_v1_chr9_-_11551608_11551608 | -0.45 | 5.5e-02 | Click! |
erg | dr11_v1_chr10_-_167782_167782 | 0.02 | 9.3e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr11_-_141592 Show fit | 7.07 |
ENSDART00000092787
|
cyclin-dependent kinase 4 |
|
chr19_-_6988837 Show fit | 5.83 |
ENSDART00000145741
ENSDART00000167640 |
zinc finger protein 384 like |
|
chr1_-_59348118 Show fit | 5.19 |
ENSDART00000170901
|
cytochrome P450, family 3, subfamily A, polypeptide 65 |
|
chr5_-_69482891 Show fit | 4.86 |
ENSDART00000109487
|
|
|
chr13_-_37189560 Show fit | 4.39 |
ENSDART00000134789
|
si:dkeyp-77c8.2 |
|
chr22_+_5687615 Show fit | 4.11 |
ENSDART00000133241
ENSDART00000019854 ENSDART00000138102 |
deoxyribonuclease 1 like 4, tandem duplicate 2 |
|
chr16_-_45001842 Show fit | 4.10 |
ENSDART00000037797
|
sulfotransferase family 2, cytosolic sulfotransferase 3 |
|
chr25_-_25384045 Show fit | 3.99 |
ENSDART00000150631
|
zgc:123278 |
|
chr14_-_8890437 Show fit | 3.99 |
ENSDART00000167242
|
si:ch73-45o6.2 |
|
chr2_-_54054225 Show fit | 3.89 |
ENSDART00000167239
|
|
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 7.0 | GO:0030834 | regulation of actin filament depolymerization(GO:0030834) negative regulation of actin filament depolymerization(GO:0030835) |
0.0 | 6.2 | GO:0070588 | calcium ion transmembrane transport(GO:0070588) |
0.3 | 6.0 | GO:0007097 | nuclear migration(GO:0007097) establishment of nucleus localization(GO:0040023) |
0.0 | 5.8 | GO:0043547 | positive regulation of GTPase activity(GO:0043547) |
0.1 | 5.7 | GO:0000381 | regulation of alternative mRNA splicing, via spliceosome(GO:0000381) |
0.1 | 5.7 | GO:0032147 | activation of protein kinase activity(GO:0032147) |
0.2 | 5.1 | GO:0038202 | TORC1 signaling(GO:0038202) |
0.1 | 4.5 | GO:0032482 | Rab protein signal transduction(GO:0032482) |
0.2 | 4.1 | GO:0048791 | calcium ion-regulated exocytosis of neurotransmitter(GO:0048791) |
0.3 | 3.8 | GO:0090110 | cargo loading into COPII-coated vesicle(GO:0090110) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 7.4 | GO:0005891 | voltage-gated calcium channel complex(GO:0005891) |
0.0 | 6.8 | GO:0014069 | postsynaptic density(GO:0014069) |
0.0 | 5.6 | GO:0031234 | extrinsic component of cytoplasmic side of plasma membrane(GO:0031234) |
0.1 | 4.7 | GO:0016592 | mediator complex(GO:0016592) |
0.3 | 4.6 | GO:0005640 | nuclear outer membrane(GO:0005640) |
0.0 | 4.0 | GO:0016459 | myosin complex(GO:0016459) |
0.2 | 3.9 | GO:0030127 | COPII vesicle coat(GO:0030127) |
0.1 | 3.9 | GO:0035371 | microtubule plus-end(GO:0035371) |
0.0 | 3.7 | GO:0005911 | cell-cell junction(GO:0005911) |
0.1 | 3.5 | GO:0008305 | integrin complex(GO:0008305) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 12.7 | GO:0030695 | GTPase regulator activity(GO:0030695) |
0.1 | 9.5 | GO:0000149 | SNARE binding(GO:0000149) |
0.0 | 7.3 | GO:0005085 | guanyl-nucleotide exchange factor activity(GO:0005085) |
0.0 | 7.2 | GO:0051015 | actin filament binding(GO:0051015) |
0.2 | 6.9 | GO:0008157 | protein phosphatase 1 binding(GO:0008157) |
0.2 | 6.1 | GO:0008331 | high voltage-gated calcium channel activity(GO:0008331) |
0.4 | 5.6 | GO:0008353 | RNA polymerase II carboxy-terminal domain kinase activity(GO:0008353) |
0.1 | 5.5 | GO:0008395 | steroid hydroxylase activity(GO:0008395) |
0.0 | 5.4 | GO:0008017 | microtubule binding(GO:0008017) |
0.1 | 5.1 | GO:0004715 | non-membrane spanning protein tyrosine kinase activity(GO:0004715) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 6.6 | SA REG CASCADE OF CYCLIN EXPR | Expression of cyclins regulates progression through the cell cycle by activating cyclin-dependent kinases. |
0.1 | 4.1 | SA B CELL RECEPTOR COMPLEXES | Antigen binding to B cell receptors activates protein tyrosine kinases, such as the Src family, which ultimate activate MAP kinases. |
0.1 | 3.7 | PID CD8 TCR PATHWAY | TCR signaling in naïve CD8+ T cells |
0.1 | 3.3 | PID PI3KCI AKT PATHWAY | Class I PI3K signaling events mediated by Akt |
0.1 | 2.7 | PID LKB1 PATHWAY | LKB1 signaling events |
0.3 | 2.6 | SA PROGRAMMED CELL DEATH | Programmed cell death, or apoptosis, eliminates damaged or unneeded cells. |
0.2 | 2.5 | ST G ALPHA S PATHWAY | G alpha s Pathway |
0.0 | 2.4 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
0.4 | 2.3 | ST TYPE I INTERFERON PATHWAY | Type I Interferon (alpha/beta IFN) Pathway |
0.2 | 2.3 | PID LPA4 PATHWAY | LPA4-mediated signaling events |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 5.8 | REACTOME G1 PHASE | Genes involved in G1 Phase |
0.0 | 4.9 | REACTOME SIGNALING BY RHO GTPASES | Genes involved in Signaling by Rho GTPases |
0.3 | 3.6 | REACTOME CREB PHOSPHORYLATION THROUGH THE ACTIVATION OF RAS | Genes involved in CREB phosphorylation through the activation of Ras |
0.2 | 3.6 | REACTOME CD28 DEPENDENT PI3K AKT SIGNALING | Genes involved in CD28 dependent PI3K/Akt signaling |
0.1 | 3.3 | REACTOME ION TRANSPORT BY P TYPE ATPASES | Genes involved in Ion transport by P-type ATPases |
0.3 | 2.7 | REACTOME MTORC1 MEDIATED SIGNALLING | Genes involved in mTORC1-mediated signalling |
0.2 | 2.7 | REACTOME INTERACTION BETWEEN L1 AND ANKYRINS | Genes involved in Interaction between L1 and Ankyrins |
0.3 | 2.3 | REACTOME REGULATION OF IFNA SIGNALING | Genes involved in Regulation of IFNA signaling |
0.6 | 2.2 | REACTOME OLFACTORY SIGNALING PATHWAY | Genes involved in Olfactory Signaling Pathway |
0.2 | 2.2 | REACTOME TRYPTOPHAN CATABOLISM | Genes involved in Tryptophan catabolism |