PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
fli1b | dr11_v1_chr16_+_42018367_42018367 | 0.65 | 2.7e-03 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr11_+_8129536 Show fit | 3.73 |
ENSDART00000158112
ENSDART00000011183 |
protein kinase, cAMP-dependent, catalytic, beta a |
|
chr15_-_4528326 Show fit | 2.91 |
ENSDART00000158122
ENSDART00000155619 ENSDART00000128602 |
transcription factor Dp-2 |
|
chr5_-_54712159 Show fit | 2.89 |
ENSDART00000149207
|
cyclin B1 |
|
chr13_+_33651416 Show fit | 2.79 |
ENSDART00000180221
|
|
|
chr10_+_22775253 Show fit | 2.56 |
ENSDART00000190141
|
transmembrane protein 88 a |
|
chr19_-_2231146 Show fit | 2.53 |
ENSDART00000181909
ENSDART00000043595 |
twist family bHLH transcription factor 1a |
|
chr5_+_46424437 Show fit | 2.38 |
ENSDART00000186511
|
versican a |
|
chr18_+_40381102 Show fit | 2.31 |
ENSDART00000136588
|
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D, like |
|
chr20_-_36800002 Show fit | 2.24 |
ENSDART00000015190
|
peptidyl-tRNA hydrolase domain containing 1 |
|
chr12_+_28955766 Show fit | 2.12 |
ENSDART00000123417
ENSDART00000139347 |
zinc finger protein 668 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 6.7 | GO:0010389 | regulation of G2/M transition of mitotic cell cycle(GO:0010389) |
0.2 | 4.8 | GO:0000387 | spliceosomal snRNP assembly(GO:0000387) |
0.4 | 4.0 | GO:0007080 | mitotic metaphase plate congression(GO:0007080) |
0.2 | 3.9 | GO:0010737 | protein kinase A signaling(GO:0010737) |
0.2 | 3.3 | GO:0045580 | regulation of T cell differentiation(GO:0045580) |
0.0 | 3.2 | GO:0046777 | protein autophosphorylation(GO:0046777) |
0.3 | 3.1 | GO:0055011 | atrial cardiac muscle cell differentiation(GO:0055011) |
0.0 | 3.1 | GO:0000122 | negative regulation of transcription from RNA polymerase II promoter(GO:0000122) |
0.1 | 2.9 | GO:0060037 | pharyngeal system development(GO:0060037) |
0.4 | 2.8 | GO:0061635 | regulation of protein complex stability(GO:0061635) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 5.9 | GO:0016324 | apical plasma membrane(GO:0016324) |
0.0 | 5.7 | GO:0005667 | transcription factor complex(GO:0005667) |
0.1 | 4.7 | GO:0030496 | midbody(GO:0030496) |
0.5 | 3.5 | GO:0034715 | pICln-Sm protein complex(GO:0034715) |
0.5 | 3.2 | GO:0070876 | SOSS complex(GO:0070876) |
0.0 | 3.2 | GO:0070160 | bicellular tight junction(GO:0005923) occluding junction(GO:0070160) |
1.0 | 2.9 | GO:0097125 | cyclin B1-CDK1 complex(GO:0097125) |
0.2 | 2.5 | GO:0000808 | origin recognition complex(GO:0000808) nuclear origin of replication recognition complex(GO:0005664) |
0.5 | 2.4 | GO:0005673 | transcription factor TFIIE complex(GO:0005673) |
0.0 | 2.4 | GO:0005777 | peroxisome(GO:0005777) microbody(GO:0042579) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 24.3 | GO:0000981 | RNA polymerase II transcription factor activity, sequence-specific DNA binding(GO:0000981) |
0.1 | 6.4 | GO:0003697 | single-stranded DNA binding(GO:0003697) |
0.0 | 6.3 | GO:0001228 | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001228) |
0.0 | 5.6 | GO:0003682 | chromatin binding(GO:0003682) |
0.1 | 4.1 | GO:0016538 | cyclin-dependent protein serine/threonine kinase regulator activity(GO:0016538) |
0.0 | 4.0 | GO:0001227 | transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001227) |
0.7 | 3.7 | GO:0004679 | AMP-activated protein kinase activity(GO:0004679) |
0.6 | 3.0 | GO:0004032 | alditol:NADP+ 1-oxidoreductase activity(GO:0004032) |
0.3 | 3.0 | GO:0004046 | aminoacylase activity(GO:0004046) |
0.0 | 2.9 | GO:0004386 | helicase activity(GO:0004386) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 4.4 | PID E2F PATHWAY | E2F transcription factor network |
0.1 | 4.2 | PID PLK1 PATHWAY | PLK1 signaling events |
0.1 | 3.3 | PID RAC1 PATHWAY | RAC1 signaling pathway |
0.2 | 2.8 | PID ALK2 PATHWAY | ALK2 signaling events |
0.2 | 2.5 | PID FOXM1 PATHWAY | FOXM1 transcription factor network |
0.1 | 2.5 | PID HEDGEHOG GLI PATHWAY | Hedgehog signaling events mediated by Gli proteins |
0.1 | 2.1 | PID BARD1 PATHWAY | BARD1 signaling events |
0.0 | 1.9 | PID DELTA NP63 PATHWAY | Validated transcriptional targets of deltaNp63 isoforms |
0.1 | 1.8 | PID TOLL ENDOGENOUS PATHWAY | Endogenous TLR signaling |
0.1 | 1.7 | PID MYC PATHWAY | C-MYC pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 5.4 | REACTOME E2F ENABLED INHIBITION OF PRE REPLICATION COMPLEX FORMATION | Genes involved in E2F-enabled inhibition of pre-replication complex formation |
0.1 | 4.8 | REACTOME MITOTIC PROMETAPHASE | Genes involved in Mitotic Prometaphase |
0.1 | 4.1 | REACTOME RNA POL II TRANSCRIPTION PRE INITIATION AND PROMOTER OPENING | Genes involved in RNA Polymerase II Transcription Pre-Initiation And Promoter Opening |
0.1 | 3.2 | REACTOME RIG I MDA5 MEDIATED INDUCTION OF IFN ALPHA BETA PATHWAYS | Genes involved in RIG-I/MDA5 mediated induction of IFN-alpha/beta pathways |
0.1 | 2.8 | REACTOME MRNA SPLICING MINOR PATHWAY | Genes involved in mRNA Splicing - Minor Pathway |
0.1 | 2.2 | REACTOME AUTODEGRADATION OF CDH1 BY CDH1 APC C | Genes involved in Autodegradation of Cdh1 by Cdh1:APC/C |
0.1 | 2.0 | REACTOME RNA POL III TRANSCRIPTION TERMINATION | Genes involved in RNA Polymerase III Transcription Termination |
0.1 | 2.0 | REACTOME APC CDC20 MEDIATED DEGRADATION OF NEK2A | Genes involved in APC-Cdc20 mediated degradation of Nek2A |
0.1 | 1.9 | REACTOME RNA POL I TRANSCRIPTION INITIATION | Genes involved in RNA Polymerase I Transcription Initiation |
0.2 | 1.8 | REACTOME P75NTR RECRUITS SIGNALLING COMPLEXES | Genes involved in p75NTR recruits signalling complexes |