PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
fosaa | dr11_v1_chr17_-_50234004_50234004 | -0.80 | 3.6e-05 | Click! |
fosab | dr11_v1_chr20_-_46554440_46554440 | -0.75 | 2.0e-04 | Click! |
fosl1a | dr11_v1_chr14_-_30747686_30747686 | -0.24 | 3.2e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr12_-_16941319 Show fit | 16.53 |
ENSDART00000109968
|
zgc:174855 |
|
chr12_-_16694092 Show fit | 15.39 |
ENSDART00000047916
|
cathepsin Lb |
|
chr12_-_16877136 Show fit | 15.16 |
ENSDART00000152593
|
si:dkey-269i1.4 |
|
chr12_-_16636627 Show fit | 14.10 |
ENSDART00000128811
|
si:dkey-239j18.3 |
|
chr12_-_16619757 Show fit | 14.05 |
ENSDART00000145570
|
cathepsin Lb |
|
chr12_-_16558106 Show fit | 13.98 |
ENSDART00000109033
|
si:dkey-269i1.4 |
|
chr12_-_16923162 Show fit | 13.33 |
ENSDART00000106072
|
si:dkey-26g8.5 |
|
chr12_+_16949391 Show fit | 12.56 |
ENSDART00000152635
|
zgc:174153 |
|
chr12_-_16898140 Show fit | 11.50 |
ENSDART00000152656
|
Cathepsin L1-like |
|
chr12_-_16619449 Show fit | 11.41 |
ENSDART00000182074
|
cathepsin Lb |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 116.1 | GO:0006955 | immune response(GO:0006955) |
0.8 | 30.6 | GO:1904029 | regulation of cyclin-dependent protein serine/threonine kinase activity(GO:0000079) regulation of cyclin-dependent protein kinase activity(GO:1904029) |
0.3 | 15.9 | GO:0000070 | mitotic sister chromatid segregation(GO:0000070) |
0.6 | 15.2 | GO:0035338 | long-chain fatty-acyl-CoA biosynthetic process(GO:0035338) |
1.2 | 15.0 | GO:0060236 | regulation of mitotic spindle organization(GO:0060236) |
0.5 | 15.0 | GO:0010499 | proteasomal ubiquitin-independent protein catabolic process(GO:0010499) |
0.6 | 14.5 | GO:0048936 | peripheral nervous system neuron axonogenesis(GO:0048936) |
0.3 | 14.1 | GO:0051225 | spindle assembly(GO:0051225) |
0.0 | 14.0 | GO:0008380 | RNA splicing(GO:0008380) |
1.5 | 13.9 | GO:0007080 | mitotic metaphase plate congression(GO:0007080) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 171.1 | GO:0005634 | nucleus(GO:0005634) |
0.4 | 121.3 | GO:0005764 | lysosome(GO:0005764) |
0.9 | 32.9 | GO:0000307 | cyclin-dependent protein kinase holoenzyme complex(GO:0000307) |
0.2 | 27.6 | GO:0005819 | spindle(GO:0005819) |
0.1 | 26.0 | GO:0005667 | transcription factor complex(GO:0005667) |
0.6 | 22.6 | GO:0005657 | replication fork(GO:0005657) |
0.1 | 20.6 | GO:0000785 | chromatin(GO:0000785) |
1.8 | 16.5 | GO:0070652 | HAUS complex(GO:0070652) |
2.6 | 15.5 | GO:0032133 | chromosome passenger complex(GO:0032133) |
0.6 | 14.6 | GO:0005685 | U1 snRNP(GO:0005685) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.8 | 117.6 | GO:0004197 | cysteine-type endopeptidase activity(GO:0004197) |
0.0 | 96.7 | GO:0000981 | RNA polymerase II transcription factor activity, sequence-specific DNA binding(GO:0000981) |
0.9 | 60.8 | GO:0016538 | cyclin-dependent protein serine/threonine kinase regulator activity(GO:0016538) |
0.2 | 23.9 | GO:0003714 | transcription corepressor activity(GO:0003714) |
0.1 | 23.1 | GO:0042393 | histone binding(GO:0042393) |
0.1 | 16.0 | GO:0003729 | mRNA binding(GO:0003729) poly(A) RNA binding(GO:0044822) |
0.0 | 13.4 | GO:0030695 | GTPase regulator activity(GO:0030695) |
0.1 | 13.2 | GO:0003712 | transcription factor activity, transcription factor binding(GO:0000989) transcription cofactor activity(GO:0003712) |
0.2 | 11.7 | GO:0031491 | nucleosome binding(GO:0031491) |
0.1 | 11.6 | GO:0003724 | RNA helicase activity(GO:0003724) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.5 | 70.5 | PID PLK1 PATHWAY | PLK1 signaling events |
0.9 | 29.5 | PID AURORA B PATHWAY | Aurora B signaling |
0.8 | 28.3 | PID FOXM1 PATHWAY | FOXM1 transcription factor network |
0.3 | 18.8 | PID TELOMERASE PATHWAY | Regulation of Telomerase |
0.3 | 18.1 | PID E2F PATHWAY | E2F transcription factor network |
0.3 | 9.5 | ST TUMOR NECROSIS FACTOR PATHWAY | Tumor Necrosis Factor Pathway. |
0.2 | 9.3 | PID FANCONI PATHWAY | Fanconi anemia pathway |
0.4 | 9.2 | PID HEDGEHOG 2PATHWAY | Signaling events mediated by the Hedgehog family |
0.1 | 9.0 | PID BETA CATENIN NUC PATHWAY | Regulation of nuclear beta catenin signaling and target gene transcription |
0.1 | 8.9 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
2.1 | 25.3 | REACTOME G2 M DNA DAMAGE CHECKPOINT | Genes involved in G2/M DNA damage checkpoint |
0.4 | 25.3 | REACTOME MITOTIC PROMETAPHASE | Genes involved in Mitotic Prometaphase |
1.2 | 24.4 | REACTOME KINESINS | Genes involved in Kinesins |
0.5 | 22.8 | REACTOME APC C CDH1 MEDIATED DEGRADATION OF CDC20 AND OTHER APC C CDH1 TARGETED PROTEINS IN LATE MITOSIS EARLY G1 | Genes involved in APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1 |
0.7 | 18.6 | REACTOME APC CDC20 MEDIATED DEGRADATION OF NEK2A | Genes involved in APC-Cdc20 mediated degradation of Nek2A |
0.7 | 16.2 | REACTOME G1 S SPECIFIC TRANSCRIPTION | Genes involved in G1/S-Specific Transcription |
0.1 | 14.9 | REACTOME TRANSLATION | Genes involved in Translation |
0.5 | 13.6 | REACTOME APOPTOTIC CLEAVAGE OF CELLULAR PROTEINS | Genes involved in Apoptotic cleavage of cellular proteins |
0.3 | 13.5 | REACTOME NRAGE SIGNALS DEATH THROUGH JNK | Genes involved in NRAGE signals death through JNK |
0.2 | 11.8 | REACTOME MRNA SPLICING | Genes involved in mRNA Splicing |