PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
si:ch211-59d15.4 | dr11_v1_chr20_+_9211237_9211237 | 0.38 | 1.1e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr24_-_40009446 Show fit | 2.36 |
ENSDART00000087422
|
amine oxidase, copper containing 1 |
|
chr2_-_293793 Show fit | 1.46 |
ENSDART00000082091
|
si:ch73-40a17.3 |
|
chr23_-_1017605 Show fit | 1.37 |
ENSDART00000138290
|
cadherin 26, tandem duplicate 1 |
|
chr21_-_40880317 Show fit | 1.35 |
ENSDART00000100054
ENSDART00000137696 |
elastin b |
|
chr15_-_47115787 Show fit | 1.19 |
ENSDART00000192601
|
|
|
chr9_-_12493628 Show fit | 1.14 |
ENSDART00000180832
|
insulin-like growth factor 2 mRNA binding protein 2a |
|
chr24_-_33366188 Show fit | 1.13 |
ENSDART00000074161
|
solute carrier family 4 (anion exchanger), member 2b |
|
chr5_-_20678300 Show fit | 1.09 |
ENSDART00000088639
|
WSC domain containing 2 |
|
chr18_+_15841449 Show fit | 1.08 |
ENSDART00000141800
ENSDART00000091349 |
early endosome antigen 1 |
|
chr23_-_1017428 Show fit | 1.08 |
ENSDART00000110588
ENSDART00000183158 |
cadherin 26, tandem duplicate 1 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.9 | GO:0007156 | homophilic cell adhesion via plasma membrane adhesion molecules(GO:0007156) |
0.5 | 2.4 | GO:0046677 | response to antibiotic(GO:0046677) |
0.1 | 1.7 | GO:0015701 | bicarbonate transport(GO:0015701) |
0.0 | 1.6 | GO:0051028 | mRNA transport(GO:0051028) |
0.0 | 1.4 | GO:1902668 | negative regulation of axon extension involved in axon guidance(GO:0048843) negative regulation of axon guidance(GO:1902668) |
0.1 | 1.1 | GO:0016973 | poly(A)+ mRNA export from nucleus(GO:0016973) |
0.0 | 1.0 | GO:0007205 | protein kinase C-activating G-protein coupled receptor signaling pathway(GO:0007205) |
0.2 | 0.9 | GO:0006031 | chitin biosynthetic process(GO:0006031) glucosamine-containing compound biosynthetic process(GO:1901073) |
0.2 | 0.9 | GO:0070208 | protein heterotrimerization(GO:0070208) |
0.1 | 0.9 | GO:0060971 | embryonic heart tube left/right pattern formation(GO:0060971) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.4 | GO:0016342 | catenin complex(GO:0016342) |
0.0 | 1.5 | GO:0031902 | late endosome membrane(GO:0031902) |
0.0 | 1.3 | GO:1902710 | GABA receptor complex(GO:1902710) GABA-A receptor complex(GO:1902711) |
0.1 | 0.9 | GO:0030428 | cell septum(GO:0030428) |
0.1 | 0.9 | GO:0043209 | myelin sheath(GO:0043209) |
0.0 | 0.9 | GO:0010494 | cytoplasmic stress granule(GO:0010494) |
0.0 | 0.8 | GO:0031228 | integral component of Golgi membrane(GO:0030173) intrinsic component of Golgi membrane(GO:0031228) |
0.1 | 0.7 | GO:0032783 | ELL-EAF complex(GO:0032783) |
0.0 | 0.6 | GO:0035869 | ciliary transition zone(GO:0035869) |
0.2 | 0.5 | GO:0043614 | multi-eIF complex(GO:0043614) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 2.4 | GO:0008131 | primary amine oxidase activity(GO:0008131) |
0.1 | 1.7 | GO:0005452 | inorganic anion exchanger activity(GO:0005452) |
0.0 | 1.6 | GO:0045296 | cadherin binding(GO:0045296) |
0.0 | 1.4 | GO:0030215 | semaphorin receptor binding(GO:0030215) |
0.0 | 1.1 | GO:0004016 | adenylate cyclase activity(GO:0004016) |
0.0 | 1.1 | GO:0003730 | mRNA 3'-UTR binding(GO:0003730) |
0.0 | 1.0 | GO:0004143 | diacylglycerol kinase activity(GO:0004143) |
0.0 | 1.0 | GO:0003724 | RNA helicase activity(GO:0003724) |
0.1 | 0.9 | GO:0004100 | chitin synthase activity(GO:0004100) |
0.1 | 0.9 | GO:0008503 | benzodiazepine receptor activity(GO:0008503) GABA-gated chloride ion channel activity(GO:0022851) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.2 | PID INSULIN PATHWAY | Insulin Pathway |
0.0 | 0.8 | PID MAPK TRK PATHWAY | Trk receptor signaling mediated by the MAPK pathway |
0.0 | 0.7 | PID IL8 CXCR1 PATHWAY | IL8- and CXCR1-mediated signaling events |
0.0 | 0.7 | PID AURORA A PATHWAY | Aurora A signaling |
0.0 | 0.4 | PID P38 GAMMA DELTA PATHWAY | Signaling mediated by p38-gamma and p38-delta |
0.0 | 0.4 | PID LPA4 PATHWAY | LPA4-mediated signaling events |
0.0 | 0.3 | SIG REGULATION OF THE ACTIN CYTOSKELETON BY RHO GTPASES | Genes related to regulation of the actin cytoskeleton |
0.0 | 0.2 | PID S1P META PATHWAY | Sphingosine 1-phosphate (S1P) pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.0 | REACTOME EFFECTS OF PIP2 HYDROLYSIS | Genes involved in Effects of PIP2 hydrolysis |
0.1 | 0.9 | REACTOME GABA A RECEPTOR ACTIVATION | Genes involved in GABA A receptor activation |
0.0 | 0.8 | REACTOME SYNTHESIS OF SUBSTRATES IN N GLYCAN BIOSYTHESIS | Genes involved in Synthesis of substrates in N-glycan biosythesis |
0.0 | 0.8 | REACTOME SPHINGOLIPID DE NOVO BIOSYNTHESIS | Genes involved in Sphingolipid de novo biosynthesis |
0.1 | 0.7 | REACTOME REGULATION OF INSULIN SECRETION BY ACETYLCHOLINE | Genes involved in Regulation of Insulin Secretion by Acetylcholine |
0.1 | 0.7 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |
0.0 | 0.6 | REACTOME REGULATION OF KIT SIGNALING | Genes involved in Regulation of KIT signaling |
0.1 | 0.4 | REACTOME DSCAM INTERACTIONS | Genes involved in DSCAM interactions |
0.0 | 0.4 | REACTOME ADENYLATE CYCLASE ACTIVATING PATHWAY | Genes involved in Adenylate cyclase activating pathway |
0.0 | 0.4 | REACTOME SYNTHESIS OF PC | Genes involved in Synthesis of PC |