PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
foxa3 | dr11_v1_chr18_-_46354269_46354269 | 0.53 | 2.1e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr5_+_36513605 Show fit | 3.08 |
ENSDART00000013590
|
wingless-type MMTV integration site family, member 11 |
|
chr5_-_20194876 Show fit | 2.85 |
ENSDART00000122587
|
D-amino-acid oxidase, tandem duplicate 1 |
|
chr7_-_32020100 Show fit | 2.30 |
ENSDART00000185433
|
kinesin family member 18A |
|
chr12_+_27537357 Show fit | 2.28 |
ENSDART00000136212
|
ets variant 4 |
|
chr3_-_50865079 Show fit | 2.20 |
ENSDART00000164295
|
peripheral myelin protein 22a |
|
chr5_-_54712159 Show fit | 2.15 |
ENSDART00000149207
|
cyclin B1 |
|
chr18_+_20566817 Show fit | 2.05 |
ENSDART00000100716
|
BH3 interacting domain death agonist |
|
chr17_+_24718272 Show fit | 2.03 |
ENSDART00000007271
|
mitochondrial fission regulator 1-like |
|
chr16_-_21785261 Show fit | 2.01 |
ENSDART00000078858
|
si:ch73-86n18.1 |
|
chr4_+_14926948 Show fit | 1.95 |
ENSDART00000019647
|
proteasome 26S subunit, ATPase 2 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.7 | 3.5 | GO:0001886 | endothelial cell morphogenesis(GO:0001886) |
0.1 | 3.1 | GO:0060037 | pharyngeal system development(GO:0060037) |
0.1 | 3.0 | GO:0010499 | proteasomal ubiquitin-independent protein catabolic process(GO:0010499) |
0.7 | 2.9 | GO:0006522 | alanine metabolic process(GO:0006522) alanine catabolic process(GO:0006524) pyruvate family amino acid metabolic process(GO:0009078) pyruvate family amino acid catabolic process(GO:0009080) D-alanine family amino acid metabolic process(GO:0046144) D-alanine metabolic process(GO:0046436) D-alanine catabolic process(GO:0055130) |
0.9 | 2.7 | GO:0021530 | spinal cord oligodendrocyte cell fate specification(GO:0021530) |
0.1 | 2.7 | GO:0007019 | microtubule depolymerization(GO:0007019) |
0.4 | 2.5 | GO:0045905 | positive regulation of translational elongation(GO:0045901) positive regulation of translational termination(GO:0045905) |
0.1 | 2.5 | GO:0000387 | spliceosomal snRNP assembly(GO:0000387) |
0.2 | 2.3 | GO:0035108 | limb morphogenesis(GO:0035108) |
0.5 | 2.1 | GO:2001244 | positive regulation of intrinsic apoptotic signaling pathway(GO:2001244) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 3.3 | GO:0005730 | nucleolus(GO:0005730) |
0.3 | 3.0 | GO:0019773 | proteasome core complex, alpha-subunit complex(GO:0019773) |
0.0 | 2.9 | GO:0005777 | peroxisome(GO:0005777) microbody(GO:0042579) |
0.0 | 2.7 | GO:0005643 | nuclear pore(GO:0005643) |
0.0 | 2.7 | GO:0005741 | mitochondrial outer membrane(GO:0005741) |
0.0 | 2.4 | GO:0030496 | midbody(GO:0030496) |
0.6 | 2.3 | GO:0061673 | mitotic spindle astral microtubule(GO:0061673) |
0.7 | 2.1 | GO:0097125 | cyclin B1-CDK1 complex(GO:0097125) |
0.4 | 1.9 | GO:0070390 | transcription export complex 2(GO:0070390) |
0.2 | 1.9 | GO:0008180 | COP9 signalosome(GO:0008180) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 5.1 | GO:0003924 | GTPase activity(GO:0003924) |
0.1 | 3.6 | GO:0005109 | frizzled binding(GO:0005109) |
0.1 | 3.3 | GO:0003746 | translation elongation factor activity(GO:0003746) |
0.7 | 2.9 | GO:0003884 | D-amino-acid oxidase activity(GO:0003884) |
0.0 | 2.8 | GO:0042393 | histone binding(GO:0042393) |
0.0 | 2.7 | GO:0030246 | carbohydrate binding(GO:0030246) |
0.1 | 2.4 | GO:0004864 | protein phosphatase inhibitor activity(GO:0004864) |
0.0 | 2.4 | GO:0003713 | transcription coactivator activity(GO:0003713) |
0.2 | 2.3 | GO:0008327 | methyl-CpG binding(GO:0008327) |
0.1 | 2.3 | GO:0008574 | ATP-dependent microtubule motor activity, plus-end-directed(GO:0008574) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 4.4 | WNT SIGNALING | Genes related to Wnt-mediated signal transduction |
0.1 | 3.8 | PID FOXM1 PATHWAY | FOXM1 transcription factor network |
0.1 | 2.3 | PID LKB1 PATHWAY | LKB1 signaling events |
0.1 | 2.1 | PID P38 ALPHA BETA DOWNSTREAM PATHWAY | Signaling mediated by p38-alpha and p38-beta |
0.0 | 1.8 | PID BETA CATENIN NUC PATHWAY | Regulation of nuclear beta catenin signaling and target gene transcription |
0.1 | 1.1 | PID HIF1A PATHWAY | Hypoxic and oxygen homeostasis regulation of HIF-1-alpha |
0.0 | 1.1 | PID AURORA B PATHWAY | Aurora B signaling |
0.0 | 1.0 | PID P53 REGULATION PATHWAY | p53 pathway |
0.0 | 0.9 | PID TELOMERASE PATHWAY | Regulation of Telomerase |
0.0 | 0.8 | ST TUMOR NECROSIS FACTOR PATHWAY | Tumor Necrosis Factor Pathway. |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 4.9 | REACTOME CROSS PRESENTATION OF SOLUBLE EXOGENOUS ANTIGENS ENDOSOMES | Genes involved in Cross-presentation of soluble exogenous antigens (endosomes) |
0.2 | 3.8 | REACTOME CYCLIN A B1 ASSOCIATED EVENTS DURING G2 M TRANSITION | Genes involved in Cyclin A/B1 associated events during G2/M transition |
0.1 | 2.8 | REACTOME ACTIVATION OF CHAPERONE GENES BY XBP1S | Genes involved in Activation of Chaperone Genes by XBP1(S) |
0.1 | 2.5 | REACTOME PTM GAMMA CARBOXYLATION HYPUSINE FORMATION AND ARYLSULFATASE ACTIVATION | Genes involved in PTM: gamma carboxylation, hypusine formation and arylsulfatase activation |
0.1 | 2.5 | REACTOME MRNA SPLICING MINOR PATHWAY | Genes involved in mRNA Splicing - Minor Pathway |
0.1 | 2.2 | REACTOME KINESINS | Genes involved in Kinesins |
0.0 | 1.9 | REACTOME CLASS B 2 SECRETIN FAMILY RECEPTORS | Genes involved in Class B/2 (Secretin family receptors) |
0.3 | 1.3 | REACTOME ENDOSOMAL VACUOLAR PATHWAY | Genes involved in Endosomal/Vacuolar pathway |
0.1 | 1.2 | REACTOME CHYLOMICRON MEDIATED LIPID TRANSPORT | Genes involved in Chylomicron-mediated lipid transport |
0.1 | 1.1 | REACTOME MTORC1 MEDIATED SIGNALLING | Genes involved in mTORC1-mediated signalling |