PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
foxb2 | dr11_v1_chr8_-_38506339_38506339 | -0.76 | 1.7e-04 | Click! |
foxb1b | dr11_v1_chr7_+_29461060_29461060 | 0.68 | 1.2e-03 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr5_+_24305877 Show fit | 5.45 |
ENSDART00000144226
|
cathepsin L, like |
|
chr6_-_43616936 Show fit | 3.06 |
ENSDART00000149301
|
forkhead box P1b |
|
chr12_-_16636627 Show fit | 2.74 |
ENSDART00000128811
|
si:dkey-239j18.3 |
|
chr23_-_3758637 Show fit | 2.73 |
ENSDART00000131536
ENSDART00000139408 ENSDART00000137826 |
high mobility group AT-hook 1a |
|
chr13_-_42400647 Show fit | 2.53 |
ENSDART00000043069
|
membrane-associated ring finger (C3HC4) 5 |
|
chr19_-_7540821 Show fit | 2.23 |
ENSDART00000143958
|
limb and CNS expressed 1 like |
|
chr12_-_16764751 Show fit | 2.08 |
ENSDART00000113862
|
zgc:174154 |
|
chr25_-_13408760 Show fit | 1.95 |
ENSDART00000154445
|
GINS complex subunit 3 |
|
chr1_-_23370395 Show fit | 1.87 |
ENSDART00000143014
ENSDART00000126785 ENSDART00000159138 |
PDS5 cohesin associated factor A |
|
chr23_-_17003533 Show fit | 1.81 |
ENSDART00000080545
|
DNA (cytosine-5-)-methyltransferase 3 beta, duplicate b.2 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 4.8 | GO:0006955 | immune response(GO:0006955) |
0.0 | 2.5 | GO:0006888 | ER to Golgi vesicle-mediated transport(GO:0006888) |
0.0 | 2.4 | GO:0034968 | histone lysine methylation(GO:0034968) |
0.0 | 2.2 | GO:0007093 | mitotic cell cycle checkpoint(GO:0007093) |
0.0 | 2.1 | GO:0051056 | regulation of small GTPase mediated signal transduction(GO:0051056) |
0.3 | 1.9 | GO:1902315 | cell cycle DNA replication initiation(GO:1902292) nuclear cell cycle DNA replication initiation(GO:1902315) mitotic DNA replication initiation(GO:1902975) |
0.1 | 1.9 | GO:0008156 | negative regulation of DNA replication(GO:0008156) |
0.4 | 1.8 | GO:0032776 | DNA methylation on cytosine(GO:0032776) |
0.1 | 1.8 | GO:0042694 | muscle cell fate specification(GO:0042694) |
0.1 | 1.8 | GO:0021551 | central nervous system morphogenesis(GO:0021551) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 9.7 | GO:0005764 | lysosome(GO:0005764) |
0.0 | 7.1 | GO:0000785 | chromatin(GO:0000785) |
0.0 | 2.6 | GO:0000775 | chromosome, centromeric region(GO:0000775) |
0.5 | 2.5 | GO:0000811 | GINS complex(GO:0000811) |
0.0 | 2.5 | GO:0030141 | secretory granule(GO:0030141) |
0.0 | 2.5 | GO:0005813 | centrosome(GO:0005813) |
0.1 | 1.9 | GO:0042555 | MCM complex(GO:0042555) |
0.1 | 1.9 | GO:0030686 | 90S preribosome(GO:0030686) |
0.1 | 1.7 | GO:0016281 | eukaryotic translation initiation factor 4F complex(GO:0016281) |
0.1 | 1.5 | GO:0070822 | Sin3-type complex(GO:0070822) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 13.4 | GO:0004197 | cysteine-type endopeptidase activity(GO:0004197) |
0.0 | 8.7 | GO:0000989 | transcription factor activity, transcription factor binding(GO:0000989) transcription cofactor activity(GO:0003712) |
0.1 | 7.2 | GO:0001227 | transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001227) |
0.0 | 5.2 | GO:0005096 | GTPase activator activity(GO:0005096) |
0.1 | 4.1 | GO:0003678 | DNA helicase activity(GO:0003678) |
0.0 | 2.5 | GO:0004715 | non-membrane spanning protein tyrosine kinase activity(GO:0004715) |
0.2 | 2.2 | GO:0016922 | ligand-dependent nuclear receptor binding(GO:0016922) |
0.0 | 1.9 | GO:0030674 | protein binding, bridging(GO:0030674) |
0.1 | 1.8 | GO:0003886 | DNA (cytosine-5-)-methyltransferase activity(GO:0003886) |
0.1 | 1.8 | GO:0005003 | ephrin receptor activity(GO:0005003) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.8 | PID ATR PATHWAY | ATR signaling pathway |
0.0 | 2.3 | PID TELOMERASE PATHWAY | Regulation of Telomerase |
0.2 | 2.2 | SA G2 AND M PHASES | Cdc25 activates the cdc2/cyclin B complex to induce the G2/M transition. |
0.1 | 2.2 | PID ERB GENOMIC PATHWAY | Validated nuclear estrogen receptor beta network |
0.0 | 2.0 | NABA ECM AFFILIATED | Genes encoding proteins affiliated structurally or functionally to extracellular matrix proteins |
0.1 | 1.7 | SA REG CASCADE OF CYCLIN EXPR | Expression of cyclins regulates progression through the cell cycle by activating cyclin-dependent kinases. |
0.0 | 1.7 | PID CERAMIDE PATHWAY | Ceramide signaling pathway |
0.1 | 1.0 | PID RET PATHWAY | Signaling events regulated by Ret tyrosine kinase |
0.0 | 1.0 | PID HEDGEHOG 2PATHWAY | Signaling events mediated by the Hedgehog family |
0.0 | 0.9 | PID IL2 PI3K PATHWAY | IL2 signaling events mediated by PI3K |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 2.2 | REACTOME G2 M DNA DAMAGE CHECKPOINT | Genes involved in G2/M DNA damage checkpoint |
0.0 | 1.9 | REACTOME SIGNALING BY RHO GTPASES | Genes involved in Signaling by Rho GTPases |
0.1 | 1.8 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
0.1 | 1.7 | REACTOME YAP1 AND WWTR1 TAZ STIMULATED GENE EXPRESSION | Genes involved in YAP1- and WWTR1 (TAZ)-stimulated gene expression |
0.2 | 1.6 | REACTOME HYALURONAN UPTAKE AND DEGRADATION | Genes involved in Hyaluronan uptake and degradation |
0.1 | 1.4 | REACTOME PACKAGING OF TELOMERE ENDS | Genes involved in Packaging Of Telomere Ends |
0.1 | 1.1 | REACTOME MRNA DECAY BY 3 TO 5 EXORIBONUCLEASE | Genes involved in mRNA Decay by 3' to 5' Exoribonuclease |
0.1 | 1.1 | REACTOME DEADENYLATION OF MRNA | Genes involved in Deadenylation of mRNA |
0.1 | 1.1 | REACTOME ACTIVATION OF ATR IN RESPONSE TO REPLICATION STRESS | Genes involved in Activation of ATR in response to replication stress |
0.0 | 1.1 | REACTOME G0 AND EARLY G1 | Genes involved in G0 and Early G1 |