PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
foxc1a | dr11_v1_chr2_-_689047_689047 | -0.47 | 4.4e-02 | Click! |
foxc1b | dr11_v1_chr20_+_26702377_26702377 | -0.16 | 5.1e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr14_-_46310204 Show fit | 3.54 |
ENSDART00000188713
ENSDART00000184930 |
crystallin, beta B1, like 1 |
|
chr22_+_20720808 Show fit | 2.87 |
ENSDART00000171321
|
si:dkey-211f22.5 |
|
chr2_-_22152797 Show fit | 2.24 |
ENSDART00000145188
|
cytochrome P450, family 7, subfamily A, polypeptide 1 |
|
chr21_-_43606502 Show fit | 2.23 |
ENSDART00000151030
|
si:ch73-362m14.4 |
|
chr1_-_22338521 Show fit | 2.21 |
ENSDART00000176849
|
si:ch73-380n15.2 |
|
chr12_-_22524388 Show fit | 2.13 |
ENSDART00000020942
|
sex hormone-binding globulin |
|
chr7_+_23907692 Show fit | 2.08 |
ENSDART00000045479
|
synaptotagmin IV |
|
chr15_-_12319065 Show fit | 2.07 |
ENSDART00000162973
ENSDART00000170543 |
FXYD domain containing ion transport regulator 6 |
|
chr10_+_2587234 Show fit | 1.96 |
ENSDART00000126937
|
wu:fb59d01 |
|
chr16_-_13818061 Show fit | 1.95 |
ENSDART00000132982
ENSDART00000144856 |
leukocyte receptor cluster (LRC) member 9 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 4.6 | GO:0014059 | dopamine secretion(GO:0014046) regulation of dopamine secretion(GO:0014059) |
0.0 | 3.7 | GO:0002088 | lens development in camera-type eye(GO:0002088) |
0.2 | 3.3 | GO:0007271 | synaptic transmission, cholinergic(GO:0007271) |
0.4 | 2.2 | GO:0006699 | bile acid biosynthetic process(GO:0006699) bile acid metabolic process(GO:0008206) |
0.1 | 2.2 | GO:2000601 | positive regulation of actin nucleation(GO:0051127) positive regulation of Arp2/3 complex-mediated actin nucleation(GO:2000601) |
0.0 | 2.1 | GO:2000649 | regulation of sodium ion transmembrane transporter activity(GO:2000649) |
0.1 | 1.9 | GO:0042572 | retinol metabolic process(GO:0042572) |
0.0 | 1.9 | GO:0030100 | regulation of endocytosis(GO:0030100) |
0.1 | 1.8 | GO:0070831 | basement membrane assembly(GO:0070831) |
0.0 | 1.7 | GO:0006937 | regulation of muscle contraction(GO:0006937) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 5.4 | GO:0070382 | exocytic vesicle(GO:0070382) |
0.0 | 2.6 | GO:0005891 | voltage-gated calcium channel complex(GO:0005891) |
0.2 | 2.0 | GO:0005892 | acetylcholine-gated channel complex(GO:0005892) |
0.1 | 1.9 | GO:0031209 | SCAR complex(GO:0031209) |
0.1 | 1.8 | GO:0043256 | basal lamina(GO:0005605) laminin complex(GO:0043256) |
0.0 | 1.7 | GO:0005861 | troponin complex(GO:0005861) |
0.1 | 1.6 | GO:0005751 | mitochondrial respiratory chain complex IV(GO:0005751) |
0.0 | 1.6 | GO:0031941 | filamentous actin(GO:0031941) |
0.0 | 1.5 | GO:0099503 | secretory vesicle(GO:0099503) |
0.2 | 1.4 | GO:0070032 | synaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex(GO:0070032) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 4.7 | GO:0001786 | phosphatidylserine binding(GO:0001786) |
0.0 | 3.7 | GO:0005212 | structural constituent of eye lens(GO:0005212) |
0.0 | 3.4 | GO:0008395 | steroid hydroxylase activity(GO:0008395) |
0.1 | 2.6 | GO:0008331 | high voltage-gated calcium channel activity(GO:0008331) |
0.0 | 2.6 | GO:0004867 | serine-type endopeptidase inhibitor activity(GO:0004867) |
0.0 | 2.3 | GO:0042562 | hormone binding(GO:0042562) |
0.2 | 2.2 | GO:0071933 | Arp2/3 complex binding(GO:0071933) |
0.1 | 2.1 | GO:0017080 | sodium channel regulator activity(GO:0017080) |
0.7 | 2.0 | GO:0042165 | neurotransmitter binding(GO:0042165) acetylcholine binding(GO:0042166) |
0.3 | 1.9 | GO:0048156 | tau protein binding(GO:0048156) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.6 | NABA PROTEOGLYCANS | Genes encoding proteoglycans |
0.1 | 1.9 | PID AR NONGENOMIC PATHWAY | Nongenotropic Androgen signaling |
0.0 | 1.1 | NABA COLLAGENS | Genes encoding collagen proteins |
0.0 | 0.4 | PID INTEGRIN2 PATHWAY | Beta2 integrin cell surface interactions |
0.0 | 0.4 | PID CDC42 REG PATHWAY | Regulation of CDC42 activity |
0.0 | 0.3 | PID IL27 PATHWAY | IL27-mediated signaling events |
0.0 | 0.3 | SIG BCR SIGNALING PATHWAY | Members of the BCR signaling pathway |
0.0 | 0.2 | PID IL12 STAT4 PATHWAY | IL12 signaling mediated by STAT4 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 2.2 | REACTOME SYNTHESIS OF BILE ACIDS AND BILE SALTS VIA 7ALPHA HYDROXYCHOLESTEROL | Genes involved in Synthesis of bile acids and bile salts via 7alpha-hydroxycholesterol |
0.1 | 2.0 | REACTOME NCAM1 INTERACTIONS | Genes involved in NCAM1 interactions |
0.0 | 1.5 | REACTOME PEPTIDE LIGAND BINDING RECEPTORS | Genes involved in Peptide ligand-binding receptors |
0.0 | 0.4 | REACTOME COMMON PATHWAY | Genes involved in Common Pathway |
0.0 | 0.3 | REACTOME PHOSPHORYLATION OF CD3 AND TCR ZETA CHAINS | Genes involved in Phosphorylation of CD3 and TCR zeta chains |
0.0 | 0.3 | REACTOME TRAF3 DEPENDENT IRF ACTIVATION PATHWAY | Genes involved in TRAF3-dependent IRF activation pathway |
0.0 | 0.2 | REACTOME CD28 DEPENDENT PI3K AKT SIGNALING | Genes involved in CD28 dependent PI3K/Akt signaling |