PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
foxd2 | dr11_v1_chr8_+_19674369_19674369 | -0.92 | 2.5e-08 | Click! |
foxd5 | dr11_v1_chr8_+_30452945_30452945 | -0.65 | 2.4e-03 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr12_-_3237561 Show fit | 6.28 |
ENSDART00000164665
|
si:ch1073-13h15.3 |
|
chr12_-_22524388 Show fit | 5.09 |
ENSDART00000020942
|
sex hormone-binding globulin |
|
chr4_+_7841627 Show fit | 4.49 |
ENSDART00000037997
|
upper zone of growth plate and cartilage matrix associated a |
|
chr21_+_40092301 Show fit | 4.38 |
ENSDART00000145150
|
serpin peptidase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 2a |
|
chr15_-_34408777 Show fit | 3.97 |
ENSDART00000139934
|
alkylglycerol monooxygenase |
|
chr4_+_12013043 Show fit | 3.88 |
ENSDART00000130692
|
cryptochrome circadian clock 1aa |
|
chr10_+_36650222 Show fit | 3.32 |
ENSDART00000126963
|
uncoupling protein 3 |
|
chr15_-_37829160 Show fit | 3.26 |
ENSDART00000099425
|
chymotrypsin-like |
|
chr8_+_16004154 Show fit | 2.98 |
ENSDART00000134787
ENSDART00000172510 ENSDART00000141173 |
ELAV like neuron-specific RNA binding protein 4 |
|
chr3_-_21280373 Show fit | 2.89 |
ENSDART00000003939
|
synaptogyrin 1a |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 4.5 | GO:0045667 | regulation of osteoblast differentiation(GO:0045667) |
0.8 | 4.0 | GO:0046485 | ether lipid metabolic process(GO:0046485) |
0.0 | 3.8 | GO:0010951 | negative regulation of endopeptidase activity(GO:0010951) |
0.1 | 3.6 | GO:0006096 | glycolytic process(GO:0006096) |
0.4 | 3.3 | GO:1990845 | adaptive thermogenesis(GO:1990845) |
0.1 | 3.1 | GO:1902653 | cholesterol biosynthetic process(GO:0006695) secondary alcohol biosynthetic process(GO:1902653) |
0.1 | 3.0 | GO:0035622 | intrahepatic bile duct development(GO:0035622) |
0.1 | 3.0 | GO:0018298 | protein-chromophore linkage(GO:0018298) |
0.1 | 2.7 | GO:0060079 | excitatory postsynaptic potential(GO:0060079) |
0.1 | 2.7 | GO:2000311 | regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity(GO:2000311) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 6.6 | GO:0031012 | extracellular matrix(GO:0031012) |
0.1 | 4.1 | GO:0043204 | perikaryon(GO:0043204) |
0.1 | 3.0 | GO:0001750 | photoreceptor outer segment(GO:0001750) |
0.0 | 3.0 | GO:0005923 | bicellular tight junction(GO:0005923) occluding junction(GO:0070160) |
0.1 | 2.9 | GO:0031594 | neuromuscular junction(GO:0031594) |
0.1 | 2.8 | GO:0005637 | nuclear inner membrane(GO:0005637) |
0.2 | 2.7 | GO:0017146 | NMDA selective glutamate receptor complex(GO:0017146) |
0.0 | 2.5 | GO:0031901 | early endosome membrane(GO:0031901) |
0.1 | 2.4 | GO:0043679 | axon terminus(GO:0043679) |
0.2 | 2.3 | GO:0005943 | phosphatidylinositol 3-kinase complex, class IA(GO:0005943) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 6.3 | GO:0005092 | GDP-dissociation inhibitor activity(GO:0005092) |
0.1 | 5.1 | GO:0042562 | hormone binding(GO:0042562) |
0.4 | 4.0 | GO:0016714 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced pteridine as one donor, and incorporation of one atom of oxygen(GO:0016714) |
0.0 | 3.7 | GO:0004867 | serine-type endopeptidase inhibitor activity(GO:0004867) |
0.0 | 3.7 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
0.8 | 3.3 | GO:0017077 | oxidative phosphorylation uncoupler activity(GO:0017077) |
0.1 | 3.1 | GO:0016628 | oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor(GO:0016628) |
0.1 | 3.0 | GO:0008020 | G-protein coupled photoreceptor activity(GO:0008020) |
0.3 | 2.8 | GO:0016803 | ether hydrolase activity(GO:0016803) |
0.2 | 2.7 | GO:0031628 | opioid receptor binding(GO:0031628) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 5.7 | PID AR NONGENOMIC PATHWAY | Nongenotropic Androgen signaling |
0.0 | 2.4 | NABA SECRETED FACTORS | Genes encoding secreted soluble factors |
0.0 | 1.0 | NABA PROTEOGLYCANS | Genes encoding proteoglycans |
0.0 | 0.9 | NABA ECM AFFILIATED | Genes encoding proteins affiliated structurally or functionally to extracellular matrix proteins |
0.1 | 0.8 | PID INTEGRIN5 PATHWAY | Beta5 beta6 beta7 and beta8 integrin cell surface interactions |
0.1 | 0.8 | PID LPA4 PATHWAY | LPA4-mediated signaling events |
0.1 | 0.6 | ST G ALPHA S PATHWAY | G alpha s Pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 4.2 | REACTOME TRAF6 MEDIATED IRF7 ACTIVATION | Genes involved in TRAF6 mediated IRF7 activation |
0.1 | 3.3 | REACTOME RESPIRATORY ELECTRON TRANSPORT ATP SYNTHESIS BY CHEMIOSMOTIC COUPLING AND HEAT PRODUCTION BY UNCOUPLING PROTEINS | Genes involved in Respiratory electron transport, ATP synthesis by chemiosmotic coupling, and heat production by uncoupling proteins. |
0.1 | 3.1 | REACTOME CHOLESTEROL BIOSYNTHESIS | Genes involved in Cholesterol biosynthesis |
0.2 | 3.0 | REACTOME SYNTHESIS OF PE | Genes involved in Synthesis of PE |
0.5 | 2.9 | REACTOME OPSINS | Genes involved in Opsins |
0.1 | 2.7 | REACTOME ADHERENS JUNCTIONS INTERACTIONS | Genes involved in Adherens junctions interactions |
0.1 | 2.6 | REACTOME CYTOCHROME P450 ARRANGED BY SUBSTRATE TYPE | Genes involved in Cytochrome P450 - arranged by substrate type |
0.2 | 2.4 | REACTOME COMMON PATHWAY | Genes involved in Common Pathway |
0.0 | 1.9 | REACTOME NUCLEAR RECEPTOR TRANSCRIPTION PATHWAY | Genes involved in Nuclear Receptor transcription pathway |
0.1 | 1.3 | REACTOME GABA A RECEPTOR ACTIVATION | Genes involved in GABA A receptor activation |